Journal Article

Dangerfield, C. E., Whalley, A. Elizabeth, Hanley, N. and Gilligan, C. A. (2018) What a difference a stochastic process makes : epidemiological-based real options models of optimal treatment of disease. Environmental and Resource Economics, 70 (3). pp. 691-711. doi:10.1007/s10640-017-0168-x

Garde-Hansen, Joanne, McEwen, Lindsey, Holmes, Andrew and Jones, Owain (2017) Sustainable flood memory : remembering as resilience. Memory Studies, 10 (4). pp. 384-405. doi:10.1177/1750698016667453

Michniewski, Slawomir, Redgwell, Tamsin, Scanlan, David J. and Millard, Andrew D. (2017) Draft genome sequence of Bacteriophage vB_Eco_swan01. Genome Announcements, 5 (28). pp. 1-17. e00501. doi:10.1128/genomeA.00501-17

Harrison, Freya, McNally, Alan, da Silva, Ana C., Heeb, Stephan and Diggle, Stephen P. (2017) Optimised chronic infection models demonstrate that siderophore ‘cheating’ in Pseudomonas aeruginosa is context specific. The ISME Journal, 11 . pp. 2492-2509. doi:10.1038/ismej.2017.103

Rashid, Goran M. M., Duran-Pena, Maria Jesus, Rahmanpour, Rahman , Sapsford, Devin and Bugg, Tim (2017) Delignification and enhanced gas release from soil containing Lignocellulose by treatment with bacterial lignin degraders. Journal of Applied Microbiology, 123 (1). pp. 159-171. doi:10.1111/jam.13470

Lidbury, Ian, Mausz, Michaela A., Scanlan, David J. and Chen, Yin (2017) Identification of dimethylamine monooxygenase in marine bacteria reveals a metabolic bottleneck in the methylated amine degradation pathway. ISME Journal, 11 . pp. 1592-1601. doi:10.1038/ismej.2017.31

Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Lloyd, Matthew, Armengaud, Jean and Scanlan, David J. (2017) Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions. Nature microbiology, 2 . 17100. doi:10.1038/nmicrobiol.2017.100

Kistler, Logan, Ware, Roselyn, Smith, Oliver, Collins, Matthew and Allaby, Robin G. (2017) A new model for ancient DNA decay based on paleogenomic meta-analysis. Nucleic Acids Research, 45 (11). pp. 6310-6320. doi:10.1093/nar/gkx361

Connelly, Stephanie, Shin, Seung G., Dillon, Robert J., Ijaz, Umer Z., Quince, Christopher, Sloan, William T. and Collins, Gavin (2017) Bioreactor scalability : laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8 . 664. doi:10.3389/fmicb.2017.00664

Popat, Roman, Harrison, Freya, da Silva, Ana C., Easton, Scott A. S., McNally, Luke, Williams, Paul and Diggle, Stephen P. (2017) Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production. Proceedings of the Royal Society B: Biological Sciences, 284 (1852). 20170200. doi:10.1098/rspb.2017.0200

King, Hayley C., Khera-Butler , Tanya, James, Phillip, Oakley, Brian B., Erenso, Girume, Aseffa, Abraham, Knight, Robert, Wellington, E. M. H. and Courtenay, Orin (2017) Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. PLoS One, 12 (3). e0173811. doi:10.1371/journal.pone.0173811

Bridge, Gavin and Bradshaw, Michael J. (2017) Making a global gas market : territoriality and production networks in liquefied natural gas. Economic Geography, 93 (3). pp. 215-240. doi:10.1080/00130095.2017.1283212

Rock, Kat S., Torr, Steven J., Lumbala, Crispin and Keeling, Matthew James (2017) Predicting the impact of intervention strategies for sleeping sickness in two high-endemicity health zones of the Democratic Republic of Congo. PLoS Neglected Tropical Diseases, 11 (1). e0005162. doi:10.1371/journal.pntd.0005162

Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, Chroňáková, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690

Trimmer, Mark, Chronopoulou, Panagiota-Myrsini, Maanoja, Susanna T., Upstill-Goddard, Robert C., Kitidis, Vassilis and Purdy, Kevin J. (2016) Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific. Nature Communications, 7 . 13451. doi:10.1038/ncomms13451

Lehmann, Katja, Bell, Thomas, Bowes, Michael J., Amos, Gregory C. A., Gaze, William H., Wellington, E. M. H. and Singer, Andrew C. (2016) Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community. Water Research, 106 . pp. 163-170. doi:10.1016/j.watres.2016.09.035

Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V. and Scanlan, David J. (2016) A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7 . 1592. doi:10.3389/fmicb.2016.01592

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Barnes, Christopher J., Burns, Caitlin A., van der Gast, Christopher J., McNamara, Niall P. and Bending, G. D. (2016) Spatio-temporal variation of core and satellite arbuscular mycorrhizal fungus communities in Miscanthus giganteus. Frontiers in Microbiology, 7 . 1278. doi:10.3389/fmicb.2016.01278

Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick and Ijaz, Umer Zeeshan (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9 (1). 365. doi:10.1186/s13104-016-2171-7

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

McClean, Gary J., Meredith, Will, Cross, Andrew, Heal, Kate V., Bending, G. D. and Sohi, Saran P. (2016) The priming potential of environmentally weathered pyrogenic carbon during land-use transition to biomass crop production. GCB Bioenergy, 8 (4). pp. 805-817. doi:10.1111/gcbb.12293

Perez-Sepulveda, Blanca, Redgwell, Tamsin, Rihtman, Branko, Pitt, Frances Diana, Scanlan, David J. , Millard, Andrew D. and Hantke, Klaus (2016) Marine phage genomics : the tip of the iceberg. FEMS Microbiology Letters, 363 (15). doi:10.1093/femsle/fnw158

Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036

Farrant, Gregory K., Doré, Hugo, Cornejo-Castillo, Francisco M., Partensky, Frédéric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J. , Iudicone, Daniele, Acinas, Silvia G. and Garczarek, Laurence (2016) Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24). E3365-E3374. doi:10.1073/pnas.1524865113

Cuthbertson, Leah, Rogers, Geraint B., Walker, Alan W., Oliver, Anna, Green, Laura E., Daniels, Thomas W. V., Carroll, Mary P., Parkhill, Julian, Bruce, Kenneth D. and van der Gast, Christopher J. (2016) Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention. The ISME Journal, 10 (5). pp. 1081-1091. doi:10.1038/ismej.2015.198

Sebastián, Marta, Smith, Alastair F., González, José M., Fredricks, Helen F., Van Mooy, Benjamin, Koblížek, Michal, Brandsma, Joost, Koster, Grielof, Mestre, Mireia, Mostajir, Behzad, Pitta, Paraskevi, Postle, Anthony D., Sánchez, Pablo, Gasol, Josep M., Scanlan, David J. and Chen, Yin (2016) Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10 (4). pp. 968-978. doi:10.1038/ismej.2015.172

Schirmer, Melanie, D’Amore, Rosalinda, Ijaz, Umer Z., Hall, Neil and Quince, Christopher (2016) Illumina error profiles : resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17 (1). pp. 1-15. 125. doi:10.1186/s12859-016-0976-y

Torondel, Belen, Ensink, Jeroen H.J., Gundogdu, Ozan, Ijaz, Umer Zeeshan, Parkhill, Julian, Abdelahi, Faraji, Nguyen, Viet-Anh, Sudgen, Steven, Gibson, Walter, Walker, Alan W. and Quince, Christopher (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9 (2). pp. 209-223. doi:10.1111/1751-7915.12334

Barnes, Christopher J., van der Gast, Christopher J., Burns, Caitlin A., McNamara, Niall P. and Bending, G. D. (2016) Temporally variable geographical distance effects contribute to the assembly of root-associated fungal communities. Frontiers in Microbiology, 7 . pp. 1-13. 195. doi:10.3389/fmicb.2016.00195

Datta, Samik and Blanchard, J. L. (Julia L.) (2016) The effects of seasonal processes on size spectrum dynamics. Canadian Journal of Fisheries and Aquatic Sciences, 73 (4). pp. 598-610. doi:10.1139/cjfas-2015-0468

D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9

Eyice, Özge and Schäfer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x

Muzafar, Mohd, Green, Laura E., Calvo-Bado, Leo A., Tichauer, Esther, King, Hayley C., James, Philip and Wellington, E. M. H. (2015) Survival of the ovine footrot pathogen Dichelobacter nodosus in different soils. Anaerobe, 38 . pp. 81-87. doi:10.1016/j.anaerobe.2015.12.010

Lidbury, Ian, Kimberley, George, Scanlan, David J., Murrell, J. C. (J. Colin) and Chen, Yin (2015) Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade. Environmental Microbiology, 17 (12). pp. 5048-5062. doi:10.1111/1462-2920.12943

Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2015) In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi? Environmental Microbiology Reports, 8 (4). pp. 445-451. doi:10.1111/1758-2229.12339

Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2015) In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi? Environmental Microbiology Reports, 8 (4). pp. 445-451. doi:10.1111/1758-2229.12339

McClean, Gary J., Rowe, Rebecca L., Heal, Kate V., Cross, Andrew, Bending, G. D. and Sohi, Saran P. (2015) An empirical model approach for assessing soil organic carbon stock changes following biomass crop establishment in Britain. Biomass and Bioenergy, 83 . pp. 141-151. doi:10.1016/j.biombioe.2015.09.005

Christie-Oleza, Joseph Alexander and Armengaud, Jean (2015) Proteomics of the Roseobacter clade, a window to the marine microbiology landscape. Proteomics, 15 (23-24). pp. 3928-3942. doi:10.1002/pmic.201500222

Jameson, Eleanor, Fu, Tiantian, Brown, Ian R., Paszkiewicz, Konrad, Purdy, Kevin J., Frank, Stefanie and Chen, Yin (2015) Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis. Environmental Microbiology, 18 . pp. 2886-2898. doi:10.1111/1462-2920.13059

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735

Eyice, Özge, Namura, Motonobu, Chen, Yin, Mead, A. (Andrew), Samavedam, Siva and Schäfer, Hendrik (2015) SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment. The ISME Journal, 9 . pp. 2336-2348. doi:10.1038/ismej.2015.37

Christie-Oleza, Joseph Alexander, Armengaud, Jean, Guerin, Philippe and Scanlan, David J. (2015) Functional distinctness in the exoproteomes of marine Synechococcus. Environmental Microbiology, 17 (10). pp. 3781-3794. doi:10.1111/1462-2920.12822

Christie-Oleza, Joseph Alexander, Scanlan, David J. and Armengaud, Jean (2015) “You produce while I clean up”, a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. Proteomics, 15 (20). pp. 3454-3462. doi:10.1002/pmic.201400562

Kowalczyk, Agnieszka, Eyice, Özge, Schäfer, Hendrik, Price, Oliver R, Finnegan, Christopher J., van Egmond, Roger A., Shaw, Liz J., Barrett, Glyn and Bending, G. D. (2015) Characterization of para-nitrophenol degrading bacterial communities in river water using functional markers and stable isotope probing. Applied and Environmental Microbiology, 81 (19). pp. 6890-6900. AEM.01794-15. doi:10.1128/AEM.01794-15

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

Bouzarovski, Stefan, Bradshaw, Michael J. and Wochnik, Alexander (2015) Making territory through infrastructure : the governance of natural gas transit in Europe. Geoforum, Volume 64 . pp. 217-228. doi:10.1016/j.geoforum.2015.06.022

Leck, Hayley, Conway, Declan, Bradshaw, Michael J. and Rees, Judith (2015) Tracing the water-energy-food nexus : description, theory and practice. Geography Compass, 9 (8). pp. 445-460. gec3.12222. doi:10.1111/gec3.12222

Zubkov, Mikhail V. , Martin, Adrian P., Hartmann, Manuela, Grob, Carolina and Scanlan, David J. (2015) Dominant oceanic bacteria secure phosphate using a large extracellular buffer. Nature Communications, 6 . 7878. doi:10.1038/ncomms8878

Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an “ORFanage” region facilitates host adaptation in a “photosynthetic” cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642

Engesser, Sabrina, Crane, Jodie M. S., Savage, James L., Russell, Andrew F. and Townsend, Simon W. (2015) Experimental evidence for phonemic contrasts in a nonhuman vocal system. PLoS Biology, 13 (6). e1002171. doi:10.1371/journal.pbio.1002171

Trimmer, Mark, Shelley, Felicity C., Purdy, Kevin J., Maanoja, Susanna T., Chronopoulou, Panagiota-Myrsini and Jonathan, Grey (2015) Riverbed methanotrophy sustained by high carbon conversion efficiency. The ISME journal, 9 . pp. 2304-2314. doi:10.1038/ismej.2015.98

Evans, Claire, Gómez-Pereira, Paola R., Martin, Adrian P., Scanlan, David J. and Zubkov, Mikhail V. (2015) Photoheterotrophy of bacterioplankton is ubiquitous in the surface oligotrophic ocean. Progress in Oceanography, Volume 135 . pp. 139-145. doi:10.1016/j.pocean.2015.04.014

Witcomb, Luci, Green, Laura E., Calvo-Bado, Leo A., Russell, Claire, Smith, Edward M., Grogono-Thomas, Rose and Wellington, E. M. H. (2015) First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH). Veterinary Microbiology, Volume 176 (Number 3–4). pp. 321-327. doi:10.1016/j.vetmic.2015.01.022

Grob, Carolina, Jardillier, Ludwig, Hartmann, Manuela, Ostrowski, Martin, Zubkov, Mikhail V. and Scanlan, David J. (2015) Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition. Environmental Microbiology Reports, Volume 7 (Number 2). pp. 211-218. doi:10.1111/1758-2229.12228

Xu, Fang, Zhu, Chipan, Cevik, Volkan, Johnson, Kaeli, Liu, Yanan, Sohn, Kee-Hoon, Jones, Jonathan D. G., Holub, E. B. and Li, Xin (2015) Autoimmunity conferred by chs3-2D relies on CSA1, its adjacent TIR-NB-LRR encoding neighbour. Scientific Reports, 5 . pp. 1-7. 8792. doi:10.1038/srep08792

Zhang, Dayi, Berry, James, Zhu, Di, Wang, Yun, Chen, Yin, Jiang, Bo, Huang, Shi, Langford, Harry, Li, Guanghe, Davison, Paul A., Xu, Jian, Aries, Eriv and Huang, Wei E. (2015) Magnetic nanoparticle-mediated isolation of functional bacteria in a complex microbial community. ISME Journal, 9 . pp. 603-614. doi:10.1038/ismej.2014.161

Peavoy, Daniel, Franzke, Christian and Roberts, Gareth O. (2015) Systematic physics constrained parameter estimation of stochastic differential equations. Computational Statistics & Data Analysis, 83 . pp. 182-199. doi:10.1016/j.csda.2014.10.011

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2015) Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium : implications for marine carbon and nitrogen cycling. The ISME Journal, 9 . pp. 760-769. doi:10.1038/ismej.2014.149

McMullan, Mark, Gardiner, Anastasia, Bailey, Kate, Kemen, Eric, Ward, Ben J., Cevik, Volkan, Robert-Seilaniantz, Alexandre, Schultz-Larsen, Torsten, Balmuth, Alexi L., Holub, E. B., Oosterhout, Cock van and Jones, Jonathan D. G. (2015) Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite. eLife, 4 . pp. 1-24. e04550. doi:10.7554/eLife.04550

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacteriumAcaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735

Allaby, Robin G., Kistler, Logan, Gutaker, Rafał M., Ware, Roselyn, Kitchen, James, Smith, Oliver and Clarke, Andrew C. (2015) Archaeogenomic insights into the adaptation of plants to the human environment : pushing plant–hominin co-evolution back to the Pliocene. Journal of Human Evolution, Volume 79 . pp. 150-157. doi:10.1016/j.jhevol.2014.10.014

Wischer, Daniela, Kumaresan, Deepak, Johnston, Antonia, El Khawand, Myriam, Stephenson, Jason, Hillebrand-Voiculescu, Alexandra M., Chen, Yin and Murrell, J. C. (J. Colin) (2015) Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave. The ISME Journal, 9 . pp. 195-206. doi:10.1038/ismej.2014.102

Allaby, Robin G., Gutaker, Rafał M., Clarke, Andrew C., Pearson, Neil, Ware, Roselyn, Palmer, Sarah A., Kitchen, James and Smith, Oliver (2014) Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops. Philosophical Transactions of the Royal Society B: Biological Sciences, Volume 370 (Number 1660). Article number 20130377. doi:10.1098/rstb.2013.0377

Riddell, Carolyn E., Lobaton Garces, Juan D., Adams, Sally, Barribeau, Seth M., Twell, David and Mallon, Eamonn B. (2014) Differential gene expression and alternative splicing in insect immune specificity. BMC Genomics, Volume 15 (Number 1). Article number 1031. doi:10.1186/1471-2164-15-1031

Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645

Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506

Zhu, Yijun , Jameson, Eleanor, Parslow, Rosemary A., Lidbury, Ian, Fu, Tiantian, Dafforn, Tim, Schäfer, Hendrik and Chen, Yin (2014) Identification and characterization of trimethylamine N-oxide (TMAO) demethylase and TMAO permease in Methylocella silvestris BL2. Environmental Microbiology, 16 (10). pp. 3318-3330. doi:10.1111/1462-2920.12585

Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524

Harrison, Freya, Muruli, Aneesha, Higgins, Steven and Diggle, Stephen P. (2014) Development of an ex vivo porcine lung model for studying growth, virulence, and signaling of pseudomonas aeruginosa. Infection and Immunity, 82 (8). pp. 3312-3323. doi:10.1128/IAI.01554-14

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017

Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. doi:10.1038/ismej.2014.130

Barnett, James P., Scanlan, David J. and Blindauer, Claudia A. (2014) Identification of major zinc-binding proteins from a marine cyanobacterium : insight into metal uptake in oligotrophic environments. Metallomics, Volume 6 (Number 7). pp. 1254-1268. doi:10.1039/c4mt00048j

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004

Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

Hartmann, Manuela, Gómez-Pereira, Paola R., Grob, Carolina, Ostrowski, Martin, Scanlan, David J. and Zubkov, Mikhail V. (2014) Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean. The ISME Journal, Volume 8 (Number 11). pp. 2280-2289. doi:10.1038/ismej.2014.56

Millard, Andrew D., Hands-Portman, Ian and Zwirglmaier, Katrin (2014) Morphotypes of virus-like particles in two hydrothermal vent fields on the East Scotia Ridge, Antarctia. Bacteriophage, Volume 4 (Number 1). Article number e28732 . doi:10.4161/bact.28732

Zhu, Yijun , Jameson, Eleanor, Cosatti, Marialuisa , Schäfer, Hendrik, Rajakumar, Kumar , Bugg, Tim and Chen, Yin (2014) Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota. Proceedings of the National Academy of Sciences of the United States of America, 111 (11). pp. 4268-4273. doi:10.1073/pnas.1316569111

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2014) Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 7). pp. 2710-2715. doi:10.1073/pnas.1317834111

Shadrinaaa, Elena and Bradshaw, Michael J. (2013) Russia's energy governance transitions and implications for enhanced cooperation with China, Japan, and South Korea. Post-Soviet Affairs, 29 (6). pp. 461-499. doi:10.1080/1060586X.2013.837635

Datta, Samik, Bull, James C., Budge, Giles E. and Keeling, Matthew James (2013) Modelling the spread of American foulbrood in honeybees. Journal of The Royal Society Interface, Volume 10 (Number 88). Article number 20130650. doi:10.1098/rsif.2013.0650

Chapman, Sandra C., Stainforth, David Alan and Watkins, Nicholas W. (2013) On estimating local long-term climate trends. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Volume 371 (Number 1991). Article number 20120287. doi:10.1098/rsta.2012.0287

Gómez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J. and Zubkov, Mikhail V. (2013) Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3). pp. 603-614. doi:10.1038/ismej.2012.126

Kirkham, Amy R., Lepère, Cécile, Jardillier, Ludwig, Not, Fabrice, Bouman, Heather, Mead, A. (Andrew) and Scanlan, David J. (2013) A global perspective on marine photosynthetic picoeukaryote community structure. The ISME Journal, Volume 7 (Number 5). pp. 922-936. doi:10.1038/ismej.2012.166

Smith, Edward M., Hoffman, Joseph I., Green, Laura E. and Amos, William (2012) Preliminary association of microsatellite heterozygosity with footrot in domestic sheep. Livestock Science, Vol.143 (No.2). pp. 293-299. doi:10.1016/j.livsci.2011.10.009

Cox, Michael J., Schäfer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. doi:10.1111/j.1574-6968.2012.02624.x

Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Burkill, Peter H., Scanlan, David J. and Zubkov, Mikhail V. (2012) Mixotrophic basis of Atlantic oligotrophic ecosystems. Proceedings of the National Academy of Sciences, Volume 109 (Number 15). pp. 5756-5760. doi:10.1073/pnas.1118179109

Kitchen, James, Moore, Jonathan D., Palmer, Sarah A. and Allaby, Robin G. (2012) MCMC-ODPR : primer design optimization using Markov Chain Monte Carlo sampling. BMC Bioinformatics, Vol.13 (No.1). p. 287. doi:10.1186/1471-2105-13-287

Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. doi:10.3389/fmicb.2012.00403

Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf and Blindauer, Claudia A. (2012) Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, Volume 3 . Article number 142. doi:10.3389/fmicb.2012.00142

Burgess, P. J., Rivas Casado, Monica, Gavu, Jerry, Mead, A. (Andrew), Cockerill, Tim, Lord, Richard, Van der Horst, Dan and Howard, D. C. (2012) A framework for reviewing the trade-offs between renewable energy, food, feed and wood production at a local level. Renewable and Sustainable Energy Reviews , Vol.16 (No.1). pp. 129-142. doi:10.1016/j.rser.2011.07.142

Grob, Carolina, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2011) Invariable biomass-specific primary production of taxonomically discrete picoeukaryote groups across the Atlantic Ocean. Environmental Microbiology, 13 (12). pp. 3266-3274. doi:10.1111/j.1462-2920.2011.02586.x

Hartmann, Manuela, Grob, Carolina, Scanlan, David J., Martin, Adrian P., Burkill, Peter H. and Zubkov, Mikhail V. (2011) Comparison of phosphate uptake rates by the smallest plastidic and aplastidic protists in the North Atlantic subtropical gyre. FEMS Microbiology Ecology, Vol.78 (No.2). pp. 327-335. doi:10.1111/j.1574-6941.2011.01160.x

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin) (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. doi:10.1073/pnas.1112928108

Kumaresan, Deepak, Stralis-Pavese, Nancy, Abell, Guy C. J., Bodrossy, Levente and Murrell, J. C. (J. Colin) (2011) Physical disturbance to ecological niches created by soil structure alters community composition of methanotrophs. Environmental Microbiology Reports, Volume 3 (Number 5). pp. 613-621. doi:10.1111/j.1758-2229.2011.00270.x

Boden, Rich, Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Dimethylsulfide is an energy source for the heterotrophic marine bacterium Sagittula stellata. FEMS Microbiology Letters, Vol.322 (No.2). pp. 188-193. doi:10.1111/j.1574-6968.2011.02349.x

Vogwill, T., Fenton, A. and Brockhurst, M. A. (2011) Coevolving parasites enhance the diversity-decreasing effect of dispersal. Biology Letters, Vol.7 (No.4). pp. 578-580. doi:10.1098/rsbl.2011.0071

Bouman, Heather A., Ulloa, Osvaldo, Barlow, Ray, Li, William K. W., Platt, Trevor, Zwirglmaier, Katrin, Scanlan, David J. and Sathyendranath, Shubha (2011) Water-column stratification governs the community structure of subtropical marine picophytoplankton. Environmental Microbiology Reports, 3 (4). pp. 473-482. doi:10.1111/j.1758-2229.2011.00241.x

Carslake, David, Grant, Wyn, Green, Laura E., Cave, Jonathan A. K., Greaves, Justin, Keeling, Matthew James, McEldowney, John F., Weldegebriel, Habtu Tadesse and Medley, Graham (2011) Endemic cattle diseases : comparative epidemiology and governance. Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol.366 (No.1573). pp. 1975-1986. doi:10.1098/rstb.2010.0396

Wilkinson, Katy, Grant, Wyn, Green, Laura E., Hunter, Stephen, Jeger, Michael J., Lowe, Philip, Medley, Graham, Mills, P. R., Phillipson, Jeremy, Poppy, Guy M. and Waage, J. K. (2011) Infectious diseases of animals and plants : an interdisciplinary approach. Royal Society of London. Philosophical Transactions B. , Vol.366 (No.1573). pp. 1933-1942. doi:10.1098/rstb.2010.0415

Mills, P. R., Dehnen-Schmutz, Katharina, Ilbery, Brian W., Jeger, Michael J., Jones, G. (Glyn), Little, R. (Ruth), MacLeod, Alan, Parker, S. (Steve), Pautasso, Marco, Pietravalle, S. and Maye, Damian (2011) Integrating natural and social science perspectives on plant disease risk, management and policy formulation. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.366 (No.1573). pp. 2035-2044. doi:10.1098/rstb.2010.0411

Chandler, Dave, Bailey, Alastair, Tatchell, Mark (G. Mark), Davidson, G. (Gill), Greaves, Justin and Grant, Wyn (2011) The development, regulation and use of biopesticides for integrated pest management. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.366 (No.1573). pp. 1987-1998. doi:10.1098/rstb.2010.0390

Kirkham, Amy R., Jardillier, Ludwig, Holland, Ross, Zubkov, Mikhail V. and Scanlan, David J. (2011) Analysis of photosynthetic picoeukaryote community structure along an extended Ellett Line transect in the northern North Atlantic reveals a dominance of novel prymnesiophyte and prasinophyte phylotypes. Deep Sea Research Part I: Oceanographic Research Papers, Vol.58 (No.7). pp. 733-744. doi:10.1016/j.dsr.2011.05.004

Boden, Rich, Ferriera, S., Johnson, J., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph methylophaga thiooxydans DMS010. Journal of Bacteriology, Vol.193 (No.12). pp. 3154-3155. doi:10.1128/JB.00388-11

Weynberg, Karen Dawn, Allen, Michael J., Gilg, Ilana C., Scanlan, David J. and Wilson, William H. (2011) Genome sequence of Ostreococcus tauri virus OtV-2 enlightens the role of picoeukaryote niche separation in the ocean. Journal of Virology, Vol.85 (No.9). pp. 4520-4529. doi:10.1128/JVI.02131-10

Shi, Xiao Li, Lepère, Cécile, Scanlan, David J. and Vaulot, Daniel (2011) Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PL o S One, Vol.6 (No.4). e18979 . doi:10.1371/journal.pone.0018979

Boden, Rich, Borodina, E., Wood, A. P., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Purification and characterization of dimethylsulfide monooxygenase from hyphomicrobium sulfonivorans. Journal of Bacteriology, Vol.193 (No.5). pp. 1250-1258. doi:10.1128/JB.00977-10

Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, Anthony W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J., Hess, Wolfgang R. and Clokie, Martha R. J. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8). pp. 2269-2274. doi:10.1093/molbev/msr041

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Rahman, M. Tanvir, Crombie, Andrew, Moussard, Hélène, Chen, Y. (Yin) and Murrell, J. C. (J. Colin) (2011) Acetate repression of methane oxidation by supplemental methylocella silvestris in a peat soil microcosm. Applied and Environmental Microbiology, Volume 77 (Number 12). pp. 4234-4236. doi:10.1128/AEM.02902-10

Kirkham, Amy R., Jardillier, Ludwig, Tiganescu, Ana, Pearman, John K., Zubkov, Mikhail V. and Scanlan, David J. (2011) Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic Meridional Transect. Environmental Microbiology, Volume 13 (Number 4). pp. 975-990. doi:10.1111/j.1462-2920.2010.02403.x

French, Simon and Bayley, C. (2011) Public participation : comparing approaches. Journal of Risk Research, Vol.14 (No.2). pp. 241-257. doi:10.1080/13669877.2010.515316

Antony, Chakkiath Paul, Kumaresan, Deepak, Ferrando, Lucia, Boden, Rich, Moussard, Hélène, Scavino, Ana Fernández, Shouche, Yogesh S and Murrell, J. C. (J. Colin) (2010) Active methylotrophs in the sediments of Lonar Lake, a saline and alkaline ecosystem formed by meteor impact. ISME Journal, Volume 4 (Number 11). pp. 1470-1480. doi:10.1038/ismej.2010.70

Ho, Thien, Wang, Liang, Huang, Linfeng, Li, Zhigang, Pallett, Denise W., Dalmay, Tamas, Ohshima, Kazusato, Walsh, John A. and Wang, Hui (2010) Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Protein & Cell, Vol.1 (No.9). pp. 847-858. doi:10.1007/s13238-010-0100-4

Bull, James C. and Bonsall, Michael B. (2010) Predators reduce extinction risk in noisy metapopulations. PL o S One, Vol.5 (No.7). doi:10.1371/journal.pone.0011635

Barker, G. C., Bayley, C., Cassidy, A., French, Simon, Hart, A., Malakar, P. K., Maule, J., Petkov, M. and Shepherd, R. (2010) Can a participatory approach contribute to food chain risk analysis? Risk Analysis, Vol.30 (No.5). pp. 766-781. doi:10.1111/j.1539-6924.2010.01385.x

Oakley, Brian B., Carbonero, Franck, van der Gast, Christopher J., Hawkins, Robert J. and Purdy, Kevin J. (2010) Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations. ISME Journal, Vol.4 (No.4). pp. 488-497. doi:10.1038/ismej.2009.146

Allender, Charlotte J. and King , Graham J. (2010) Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers. BMC Plant Biology, Vol.10 (Article 54). doi:10.1186/1471-2229-10-54

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

Jameson, Eleanor, Joint, Ian, Mann, Nicholas H. and Muehling, Martin (2010) Detailed analysis of the microdiversity of Prochlorococcus populations along a north-south Atlantic ocean transect. Environmental Microbiology, Vol.12 (No.1). pp. 156-171. doi:10.1111/j.1462-2920.2009.02057.x

Schäfer, Hendrik, Myronova, Natalia and Boden, Rich (2010) Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere. Journal of Experimental Botany, Vol.61 (No.2). pp. 315-334. doi:10.1093/jxb/erp355

Peavoy, Daniel and Franzke, Christian (2010) Bayesian analysis of rapid climate change during the last glacial using Greenland delta O-18 data. Climate of the Past, Volume 6 (Number 6). pp. 787-794. doi:10.5194/cp-6-787-2010

Stott, Iain, Townley, Stuart, Carslake, David and Hodgson, David J. (2010) On reducibility and ergodicity of population projection matrix models. Methods in Ecology and Evolution, Volume 1 (Number 3). pp. 242-252. doi:10.1111/j.2041-210X.2010.00032.x

Hoebe, P. N., Stift, M., Holub, E. B. and Mable, Barbara K. (2010) The effect of mating system on growth of Arabidopsis lyrata in response to inoculation with the biotrophic parasite Albugo candida. Journal of Evolutionary Biology, Volume 24 (Number 2). pp. 391-401. doi:10.1111/j.1420-9101.2010.02177.x

Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09

Carslake, David, Townley, Stuart and Hodgson, David J. (2009) Patterns and rules for sensitivity and elasticity in population projection matrices. Ecology, Vol.90 (No.11). pp. 3258-3267. doi:10.1890/08-1188.1

Shi, Xiao Li, Marie, D., Jardillier, Ludwig, Scanlan, David J. and Vaulot, Daniel (2009) Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean. PLoS One, Vol.4 (No.10). Article No. e7657. doi:10.1371/journal.pone.0007657

Cunliffe, Michael, Salter, Matthew, Mann, Paul J., Whiteley, Andrew S., Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Dissolved organic carbon and bacterial populations in the gelatinous surface microlayer of a Norwegian fjord mesocosm. FEMS Microbiology Letters, Vol.299 (No.2). pp. 248-254. doi:10.1111/j.1574-6968.2009.01751.x

Hartmann, Manuela, Zubkov, Mikhail V., Martin, Adrian P., Scanlan, David J. and Burkill, Peter H. (2009) Assessing amino acid uptake by phototrophic nanoflagellates in nonaxenic cultures using flow cytometric sorting. FEMS Microbiology Letters, Vol.298 (No.2). pp. 166-173. doi:10.1111/j.1574-6968.2009.01715.x

Chen, Yin, Wu, Liqin, Boden, Rich, Hillebrand, Alexandra, Kumaresan, Deepak, Moussard, Helene, Baciu, Mihai, Lu, Yahai and Murrell, J. C. (J. Colin) (2009) Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave. ISME Journal, Vol.3 (No.9). pp. 1093-1104. doi:10.1038/ismej.2009.57

Carslake, David, Townley, Stuart and Hodgson, David J. (2009) Predicting the impact of stage-specific harvesting on population dynamics. Journal of Animal Ecology, Vol.78 (No.5). pp. 1076-1085. doi:10.1111/j.1365-2656.2009.01569.x

O'Dell, L. A., Klimm, K., Freitas, J. C. C., Kohn, S. C. and Smith, Mark E. (2009) (33)S MAS NMR of a disordered sulfur-doped silicate: signal enhancement via RAPT, QCPMG and adiabatic pulses. Applied Magnetic Resonance, Vol.35 (No.2). pp. 247-259. doi:10.1007/s00723-008-0159-8

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07

Palmer, Sarah A., Moore, Jonathan D., Clapham, Alan J., Rose, Pamela and Allaby, Robin G. (2009) Archaeogenetic evidence of ancient Nubian barley evolution from six to two-row indicates local adaptation. PLoS ONE , Vol.4 (No.7). e6301. doi:10.1371/journal.pone.0006301

Cunliffe, Michael, Harrison, Emma, Salter, Matthew, Schaefer, Hendrik, Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Comparison and validation of sampling strategies for the molecular microbial analysis of surface microlayers. Aquatic Microbial Ecology, Vol.57 (No.1). pp. 69-77. doi:10.3354/ame01330

Brown, T. A., Jones, Martin K., Powell, Wayne and Allaby, Robin G. (2008) The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology & Evolution, Vol.24 (No.2). pp. 103-109. doi:10.1016/j.tree.2008.09.008

Schnippering, Mathias, Unwin, Patrick R., Hult, Johan, Laurila, Toni, Kaminski, Clemens F., Langridge, Justin M., Jones, Roderic L., Mazurenka, Mikhail and Mackenzie, Stuart R. (2008) Evanescent wave broadband cavity enhanced absorption spectroscopy using supercontinuum radiation : a new probe of electrochemical processes. Electrochemistry Communications, Vol.10 (No.12). pp. 1827-1830. doi:10.1016/j.elecom.2008.09.014

Guillou, L., Viprey, M., Chambouvet, A., Welsh, R. M., Kirkham, A. R., Massana, R., Scanlan, David J. and Worden, A. Z. (2008) Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology, Vol.10 (No.12). pp. 3349-3365. doi:10.1111/j.1462-2920.2008.01731.x

Jensen, Sigmund, Neufeld, Josh D., Birkeland, Nils-Kare, Hovland, M. (Martin) and Murrell, J. C. (J. Colin) (2008) Insight into the microbial community structure of a Norwegian deep-water coral reef environment. Deep-Sea Research. Part 1: Oceanographic Research Papers, Volume 55 (Number 11). pp. 1554-1563. doi:10.1016/j.dsr.2008.06.008

Bull, James C. and Bonsall, Michael (2008) Overcompensatory population dynamic responses to environmental stochasticity. Journal of Animal Ecology, Volume 77 (Number 6). pp. 1296-1305. doi:10.1111/j.1365-2656.2008.01449.x

Neufeld, Josh D. , Boden, Rich, Moussard, Hélène, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, Vol.74 (No.23). pp. 7321-7328. doi:10.1128/AEM.01266-08

Chen, Yin, Dumont, Marc G., Neufeld, Josh D., Bodrossy, Levente, Stralis-Pavese, Nancy, McNamara, Niall P., Ostle, Nick, Briones, Maria J. I. and Murrell, J. C. (J. Colin) (2008) Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands. Environmental Microbiology, Vol.10 (No.10). pp. 2609-2622. doi:10.1111/j.1462-2920.2008.01683.x

Cunliffe, Michael, Schaefer, Hendrik, Harrison, E. (Emma), Cleave, Simon, Upstill-Goddard, R. C. (Robert C.) and Murrell, J. C. (J. Colin) (2008) Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary. ISME Journal, Volume 2 (Number 7). pp. 776-789. doi:10.1038/ismej.2008.28

Neufeld, Josh D., Chen, Yin, Dumont, Marc G. and Murrell, J. C. (J. Colin) (2008) Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environmental Microbiology, Vol.10 (No.6). pp. 1526-1535. doi:10.1111/j.1462-2920.2008.01568.x

Dufresne, Alexis, Ostrowski, Martin, Scanlan, David J. , Garczarek, Laurence, Mazard, Sophie, Palenik, Brian P., Paulsen, Ian T., Tandeau de Marsac, Nicole, Johnson, Justin, Post, Anton F., Hess, Wolfgang R. and Partensky, Frédéric (2008) Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology, Vol.9 (No.R90). Article no.R90. doi:10.1186/gb-2008-9-5-r90

Mary, Isabelle, Garczarek, Laurence, Tarran, Glen A. , Kolowrat, Christian , Terry, Matthew J. , Scanlan, David J. , Burkill, Peter H. and Zubkov, Mikhail V. (2008) Diel rhythmicity in amino acid uptake by Prochlorococcus. Environmental Microbiology, Vol.10 (No.8). pp. 2124-2131. doi:10.1111/j.1462-2920.2008.01633.x

Muhling, Martin, Woolven-Allen, John, Murrell, J. C. (J. Colin) and Joint, Ian (2008) Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities. ISME Journal, Volume 2 (Number 4). pp. 379-392. doi:10.1038/ismej.2007.97

Chen, Y. (Yin), Dumont, Marc G., McNamara, Niall P., Chamberlain, P. M. (Paul M.), Bodrossy, Levente, Stralis-Pavese, Nancy and Murrell, J. C. (J. Colin) (2008) Diversity of the active methanotrophic community in acidic peatlands as assessed by mRNA and SIP-PLFA analyses. Environmental Microbiology, Vol.10 (No.2). pp. 446-459. doi:10.1111/j.1462-2920.2007.01466.x

Jameson, Eleanor, Joint, Ian, Mann, Nicholas H. and Muehling, Martin (2008) Application of a novel rpoC1-RFLP approach reveals that marine Prochlorococcus populations in the atlantic gyres are composed of greater microdiversity than previously described. Microbial Ecology, Vol.55 (No.1). pp. 141-151. doi:10.1007/s00248-007-9259-5

Hery, Marina, Singer, Andrew C., Kumaresan, Deepak, Bodrossy, Levente, Stralis-Pavese, Nancy, Prosser, James I. (James Ivor), Thompson, Ian P. and Murrell, J. C. (J. Colin) (2008) Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. The ISME Journal, Vol.2 (No.1). pp. 92-104. doi:10.1038/ismej.2007.66

Zwirglmaier, Katrin, Jardillier, Ludwig, Ostrowski, Martin, Mazard, Sophie, Garczarek, Laurence, Vaulot, Daniel, Not, Fabrice, Massana, Ramon, Ulloa, Osvaldo and Scanlan, David J. (2008) Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environmental Microbiology, Vol.10 (No.1). pp. 147-161. doi:10.1111/j.1462-2920.2007.01440.x

Mary, Isabelle, Tarran, Glen A. , Warwick, Phillip E., Terry, Matthew J. , Scanlan, David J. , Burkill, Peter H. and Zubkov, Mikhail V. (2008) Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean. FEMS Microbiology Ecology, Vol.63 (No.1). pp. 36-45. doi:10.1111/j.1574-6941.2007.00414.x

Bayley, Clare and French, Simon (2008) Designing a participatory process for stakeholder involvement in a societal decision. Group Decision and Negotiation, Vol.17 (No.3). pp. 195-210. doi:10.1007/s10726-007-9076-8

McDonald, Sarah M., Sarno, Diana, Scanlan, David J. and Zingone, Adriana (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology, Volume 50 (Number 1). pp. 75-89. doi:10.3354/ame01148

Six, Christophe, Thomas, Jean-Claude , Garczarek, Laurence, Ostrowski, Martin, Dufresne, Alexis, Blot, Nicolas, Scanlan, David J. and Partensky, Frédéric (2007) Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biology, Vol.8 (No.12). doi:10.1186/gb-2007-8-12-r259

Thomas, P. J. (Peter J.) and Linden, P. F. (2007) Rotating gravity currents: small-scale and large-scale laboratory experiments and a geostrophic model. Journal of Fluid Mechanics, Vol.57 . pp. 35-65. doi:10.1017/S0022112007004739

Mahenthiralingam, Eshwar, Baldwin, Adam, Drevinek, Pavel, Vanlaere, Elke, Vandamme, Peter, LiPuma, John J. and Dowson, Christopher G. (2006) Multilocus sequence typing breathes life into a microbial metagenome. PLoS One, Vol.1 (No.1). doi:10.1371/journal.pone.0000017

Clokie, Martha R. J., Millard, Andrew D., Mehta, Jaytry Y. and Mann, Nicholas H. (2006) Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 499-505. doi:10.1017/S0025315406013415

Millard, Andrew D. and Mann, Nicholas H. (2006) A temporal and spatial investigation of cyanophage abundance in the Gulf of Aqaba Red Sea. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 507-515. doi:10.1017/S0025315406013415

Clokie, Martha R. J., Shan, Jinyu, Bailey, Shaun, Jia, Ying, Krisch, Henry M., West, Stephen and Mann, Nicholas H. (2006) Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium. Environmental Microbiology, Vol.8 (No.5). pp. 827-835. doi:10.1111/j.1462-2920.2005.00969.x

Mann, Nicholas H., Clokie, Martha R. J., Millard, Andrew D., Cook, A. (Annabel), Wilson, W. H. (William H.), Wheatley, P. J., Letarov, Andrey and Krish, H. M (2005) The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains. Journal of Bacteriology, Volume 187 (Number 9). pp. 3188-3200. doi:10.1128/JB.187.9.3188-3200.2005

Somerfield, Paul J., Muhling, Martin, Fuller, Nicholas J., Millard, Andrew D., Dominique, Marie, Wilson, W. H., Scanlan, David J., Post, Anton F., Joint, Ian and Mann, Nicholas H. (2005) Genetic diversity of marine Synechococcus and co-occurring cyanophage communities : evidence for viral control of phytoplankton. Environmental Microbiology, Volume 7 (Number 4). pp. 499-508. doi:10.1111/j.1462-2920.2005.00713.x

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Stainforth, David A., Chapman, Sandra C. and Watkins, Nicholas W. (2014) Mapping climate change in European temperature distributions. Environmental Research Letters, Volume 8 (Number 3). Article number 034031. doi:10.1088/1748-9326/8/3/034031

Cunliffe, Michael and Murrell, J. C. (J. Colin) (2010) Eukarya 18S rRNA gene diversity in the sea surface microlayer: implications for the structure of the neustonic microbial loop. ISME Journal, Vol.4 (No.3). pp. 455-458. doi:10.1038/ismej.2009.133

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