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Journal Article
Dangerfield, C. E., Whalley, A. Elizabeth, Hanley, N. and Gilligan, C. A. (2018) What a difference a stochastic process makes : epidemiological-based real options models of optimal treatment of disease. Environmental and Resource Economics, 70 (3). pp. 691-711. doi:10.1007/s10640-017-0168-x ISSN 0924-6460.
Garde-Hansen, Joanne, McEwen, Lindsey, Holmes, Andrew and Jones, Owain (2017) Sustainable flood memory : remembering as resilience. Memory Studies, 10 (4). pp. 384-405. doi:10.1177/1750698016667453 ISSN 1750-6980.
Michniewski, Slawomir, Redgwell, Tamsin, Scanlan, David J. and Millard, Andrew D. (2017) Draft genome sequence of Bacteriophage vB_Eco_swan01. Genome Announcements, 5 (28). pp. 1-17. e00501. doi:10.1128/genomeA.00501-17 ISSN 2169-8287.
Harrison, Freya, McNally, Alan, da Silva, Ana C., Heeb, Stephan and Diggle, Stephen P. (2017) Optimised chronic infection models demonstrate that siderophore βcheatingβ in Pseudomonas aeruginosa is context specific. The ISME Journal, 11 . pp. 2492-2509. doi:10.1038/ismej.2017.103 ISSN 1751-7362.
Rashid, Goran M. M., Duran-Pena, Maria Jesus, Rahmanpour, Rahman , Sapsford, Devin and Bugg, Tim (2017) Delignification and enhanced gas release from soil containing Lignocellulose by treatment with bacterial lignin degraders. Journal of Applied Microbiology, 123 (1). pp. 159-171. doi:10.1111/jam.13470 ISSN 1364-5072.
Lidbury, Ian, Mausz, Michaela A., Scanlan, David J. and Chen, Yin (2017) Identification of dimethylamine monooxygenase in marine bacteria reveals a metabolic bottleneck in the methylated amine degradation pathway. ISME Journal, 11 . pp. 1592-1601. doi:10.1038/ismej.2017.31 ISSN 1751-7362.
Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Lloyd, Matthew, Armengaud, Jean and Scanlan, David J. (2017) Nutrient recycling facilitates long-term stability of marine microbial phototrophβheterotroph interactions. Nature microbiology, 2 . 17100. doi:10.1038/nmicrobiol.2017.100 ISSN 2058-5276.
Kistler, Logan, Ware, Roselyn, Smith, Oliver, Collins, Matthew and Allaby, Robin G. (2017) A new model for ancient DNA decay based on paleogenomic meta-analysis. Nucleic Acids Research, 45 (11). pp. 6310-6320. doi:10.1093/nar/gkx361 ISSN 0305-1048.
Connelly, Stephanie, Shin, Seung G., Dillon, Robert J., Ijaz, Umer Z., Quince, Christopher, Sloan, William T. and Collins, Gavin (2017) Bioreactor scalability : laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8 . 664. doi:10.3389/fmicb.2017.00664 ISSN 1664-302X.
Popat, Roman, Harrison, Freya, da Silva, Ana C., Easton, Scott A. S., McNally, Luke, Williams, Paul and Diggle, Stephen P. (2017) Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production. Proceedings of the Royal Society B: Biological Sciences, 284 (1852). 20170200. doi:10.1098/rspb.2017.0200 ISSN 0962-8452.
King, Hayley C., Khera-Butler , Tanya, James, Phillip, Oakley, Brian B., Erenso, Girume, Aseffa, Abraham, Knight, Robert, Wellington, E. M. H. and Courtenay, Orin (2017) Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. PLoS One, 12 (3). e0173811. doi:10.1371/journal.pone.0173811 ISSN 1932-6203.
Bridge, Gavin and Bradshaw, Michael J. (2017) Making a global gas market : territoriality and production networks in liquefied natural gas. Economic Geography, 93 (3). pp. 215-240. doi:10.1080/00130095.2017.1283212 ISSN 0013-0095.
Rock, Kat S., Torr, Steven J., Lumbala, Crispin and Keeling, Matthew James (2017) Predicting the impact of intervention strategies for sleeping sickness in two high-endemicity health zones of the Democratic Republic of Congo. PLoS Neglected Tropical Diseases, 11 (1). e0005162. doi:10.1371/journal.pntd.0005162 ISSN 1935-2727.
Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, ChroΕΓ‘kovΓ‘, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690 ISSN 2167-8359.
Trimmer, Mark, Chronopoulou, Panagiota-Myrsini, Maanoja, Susanna T., Upstill-Goddard, Robert C., Kitidis, Vassilis and Purdy, Kevin J. (2016) Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific. Nature Communications, 7 . 13451. doi:10.1038/ncomms13451 ISSN 2041-1723.
Lehmann, Katja, Bell, Thomas, Bowes, Michael J., Amos, Gregory C. A., Gaze, William H., Wellington, E. M. H. and Singer, Andrew C. (2016) Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community. Water Research, 106 . pp. 163-170. doi:10.1016/j.watres.2016.09.035 ISSN 0043-1354.
Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V. and Scanlan, David J. (2016) A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7 . 1592. doi:10.3389/fmicb.2016.01592 ISSN 1664-302X.
Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159 ISSN 0168-6496.
Barnes, Christopher J., Burns, Caitlin A., van der Gast, Christopher J., McNamara, Niall P. and Bending, G. D. (2016) Spatio-temporal variation of core and satellite arbuscular mycorrhizal fungus communities in Miscanthus giganteus. Frontiers in Microbiology, 7 . 1278. doi:10.3389/fmicb.2016.01278 ISSN 1664-302X.
Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick and Ijaz, Umer Zeeshan (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9 (1). 365. doi:10.1186/s13104-016-2171-7 ISSN 1756-0500.
Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, JΓΌrgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-Ξ²-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16 ISSN 0066-4804.
McClean, Gary J., Meredith, Will, Cross, Andrew, Heal, Kate V., Bending, G. D. and Sohi, Saran P. (2016) The priming potential of environmentally weathered pyrogenic carbon during land-use transition to biomass crop production. GCB Bioenergy, 8 (4). pp. 805-817. doi:10.1111/gcbb.12293 ISSN 17571693.
Perez-Sepulveda, Blanca, Redgwell, Tamsin, Rihtman, Branko, Pitt, Frances Diana, Scanlan, David J. , Millard, Andrew D. and Hantke, Klaus (2016) Marine phage genomics : the tip of the iceberg. FEMS Microbiology Letters, 363 (15). doi:10.1093/femsle/fnw158 ISSN 0378-1097.
Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.
Farrant, Gregory K., DorΓ©, Hugo, Cornejo-Castillo, Francisco M., Partensky, FrΓ©dΓ©ric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J. , Iudicone, Daniele, Acinas, Silvia G. and Garczarek, Laurence (2016) Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24). E3365-E3374. doi:10.1073/pnas.1524865113 ISSN 0027-8424.
Cuthbertson, Leah, Rogers, Geraint B., Walker, Alan W., Oliver, Anna, Green, Laura E., Daniels, Thomas W. V., Carroll, Mary P., Parkhill, Julian, Bruce, Kenneth D. and van der Gast, Christopher J. (2016) Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention. The ISME Journal, 10 (5). pp. 1081-1091. doi:10.1038/ismej.2015.198 ISSN 1751-7362.
SebastiΓ‘n, Marta, Smith, Alastair F., GonzΓ‘lez, JosΓ© M., Fredricks, Helen F., Van Mooy, Benjamin, KoblΓΕΎek, Michal, Brandsma, Joost, Koster, Grielof, Mestre, Mireia, Mostajir, Behzad, Pitta, Paraskevi, Postle, Anthony D., SΓ‘nchez, Pablo, Gasol, Josep M., Scanlan, David J. and Chen, Yin (2016) Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10 (4). pp. 968-978. doi:10.1038/ismej.2015.172 ISSN 1751-7362.
Schirmer, Melanie, DβAmore, Rosalinda, Ijaz, Umer Z., Hall, Neil and Quince, Christopher (2016) Illumina error profiles : resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17 (1). pp. 1-15. 125. doi:10.1186/s12859-016-0976-y ISSN 1471-2105.
Torondel, Belen, Ensink, Jeroen H.J., Gundogdu, Ozan, Ijaz, Umer Zeeshan, Parkhill, Julian, Abdelahi, Faraji, Nguyen, Viet-Anh, Sudgen, Steven, Gibson, Walter, Walker, Alan W. and Quince, Christopher (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9 (2). pp. 209-223. doi:10.1111/1751-7915.12334 ISSN 1751-7907.
Barnes, Christopher J., van der Gast, Christopher J., Burns, Caitlin A., McNamara, Niall P. and Bending, G. D. (2016) Temporally variable geographical distance effects contribute to the assembly of root-associated fungal communities. Frontiers in Microbiology, 7 . pp. 1-13. 195. doi:10.3389/fmicb.2016.00195 ISSN 1664-302X.
Datta, Samik and Blanchard, J. L. (Julia L.) (2016) The effects of seasonal processes on size spectrum dynamics. Canadian Journal of Fisheries and Aquatic Sciences, 73 (4). pp. 598-610. doi:10.1139/cjfas-2015-0468 ISSN 0706-652X.
DβAmore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9 ISSN 1471-2164.
Eyice, Γzge and SchΓ€fer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x ISSN 0302-8933.
Muzafar, Mohd, Green, Laura E., Calvo-Bado, Leo A., Tichauer, Esther, King, Hayley C., James, Philip and Wellington, E. M. H. (2015) Survival of the ovine footrot pathogen Dichelobacter nodosus in different soils. Anaerobe, 38 . pp. 81-87. doi:10.1016/j.anaerobe.2015.12.010 ISSN 10759964.
Lidbury, Ian, Kimberley, George, Scanlan, David J., Murrell, J. C. (J. Colin) and Chen, Yin (2015) Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade. Environmental Microbiology, 17 (12). pp. 5048-5062. doi:10.1111/1462-2920.12943 ISSN 1462-2912.
Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2015) In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi? Environmental Microbiology Reports, 8 (4). pp. 445-451. doi:10.1111/1758-2229.12339 ISSN 1758-2229.
Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2015) In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi? Environmental Microbiology Reports, 8 (4). pp. 445-451. doi:10.1111/1758-2229.12339 ISSN 1758-2229.
McClean, Gary J., Rowe, Rebecca L., Heal, Kate V., Cross, Andrew, Bending, G. D. and Sohi, Saran P. (2015) An empirical model approach for assessing soil organic carbon stock changes following biomass crop establishment in Britain. Biomass and Bioenergy, 83 . pp. 141-151. doi:10.1016/j.biombioe.2015.09.005 ISSN 0961-9534.
Christie-Oleza, Joseph Alexander and Armengaud, Jean (2015) Proteomics of the Roseobacter clade, a window to the marine microbiology landscape. Proteomics, 15 (23-24). pp. 3928-3942. doi:10.1002/pmic.201500222 ISSN 1615-9853.
Jameson, Eleanor, Fu, Tiantian, Brown, Ian R., Paszkiewicz, Konrad, Purdy, Kevin J., Frank, Stefanie and Chen, Yin (2015) Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis. Environmental Microbiology, 18 . pp. 2886-2898. doi:10.1111/1462-2920.13059 ISSN 1462-2912.
Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735 ISSN 1462-2912.
Eyice, Γzge, Namura, Motonobu, Chen, Yin, Mead, A. (Andrew), Samavedam, Siva and SchΓ€fer, Hendrik (2015) SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment. The ISME Journal, 9 . pp. 2336-2348. doi:10.1038/ismej.2015.37 ISSN 1751-7362.
Christie-Oleza, Joseph Alexander, Armengaud, Jean, Guerin, Philippe and Scanlan, David J. (2015) Functional distinctness in the exoproteomes of marine Synechococcus. Environmental Microbiology, 17 (10). pp. 3781-3794. doi:10.1111/1462-2920.12822 ISSN 1462-2912.
Christie-Oleza, Joseph Alexander, Scanlan, David J. and Armengaud, Jean (2015) βYou produce while I clean upβ, a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. Proteomics, 15 (20). pp. 3454-3462. doi:10.1002/pmic.201400562 ISSN 1615-9853.
Kowalczyk, Agnieszka, Eyice, Γzge, SchΓ€fer, Hendrik, Price, Oliver R, Finnegan, Christopher J., van Egmond, Roger A., Shaw, Liz J., Barrett, Glyn and Bending, G. D. (2015) Characterization of para-nitrophenol degrading bacterial communities in river water using functional markers and stable isotope probing. Applied and Environmental Microbiology, 81 (19). pp. 6890-6900. AEM.01794-15. doi:10.1128/AEM.01794-15 ISSN 0099-2240.
Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327 ISSN 1932-6203.
Bouzarovski, Stefan, Bradshaw, Michael J. and Wochnik, Alexander (2015) Making territory through infrastructure : the governance of natural gas transit in Europe. Geoforum, Volume 64 . pp. 217-228. doi:10.1016/j.geoforum.2015.06.022 ISSN 0016-7185.
Leck, Hayley, Conway, Declan, Bradshaw, Michael J. and Rees, Judith (2015) Tracing the water-energy-food nexus : description, theory and practice. Geography Compass, 9 (8). pp. 445-460. gec3.12222. doi:10.1111/gec3.12222 ISSN 1749-8198.
Zubkov, Mikhail V. , Martin, Adrian P., Hartmann, Manuela, Grob, Carolina and Scanlan, David J. (2015) Dominant oceanic bacteria secure phosphate using a large extracellular buffer. Nature Communications, 6 . 7878. doi:10.1038/ncomms8878 ISSN 2041-1723.
Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an βORFanageβ region facilitates host adaptation in a βphotosyntheticβ cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642 ISSN 1932-6203.
Engesser, Sabrina, Crane, Jodie M. S., Savage, James L., Russell, Andrew F. and Townsend, Simon W. (2015) Experimental evidence for phonemic contrasts in a nonhuman vocal system. PLoS Biology, 13 (6). e1002171. doi:10.1371/journal.pbio.1002171 ISSN 1545-7885.
Trimmer, Mark, Shelley, Felicity C., Purdy, Kevin J., Maanoja, Susanna T., Chronopoulou, Panagiota-Myrsini and Jonathan, Grey (2015) Riverbed methanotrophy sustained by high carbon conversion efficiency. The ISME journal, 9 . pp. 2304-2314. doi:10.1038/ismej.2015.98 ISSN 1751-7362.
Evans, Claire, GΓ³mez-Pereira, Paola R., Martin, Adrian P., Scanlan, David J. and Zubkov, Mikhail V. (2015) Photoheterotrophy of bacterioplankton is ubiquitous in the surface oligotrophic ocean. Progress in Oceanography, Volume 135 . pp. 139-145. doi:10.1016/j.pocean.2015.04.014 ISSN 0079-6611.
Witcomb, Luci, Green, Laura E., Calvo-Bado, Leo A., Russell, Claire, Smith, Edward M., Grogono-Thomas, Rose and Wellington, E. M. H. (2015) First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH). Veterinary Microbiology, Volume 176 (Number 3β4). pp. 321-327. doi:10.1016/j.vetmic.2015.01.022 ISSN 0378-1135.
Grob, Carolina, Jardillier, Ludwig, Hartmann, Manuela, Ostrowski, Martin, Zubkov, Mikhail V. and Scanlan, David J. (2015) Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition. Environmental Microbiology Reports, Volume 7 (Number 2). pp. 211-218. doi:10.1111/1758-2229.12228 ISSN 1758-2229.
Xu, Fang, Zhu, Chipan, Cevik, Volkan, Johnson, Kaeli, Liu, Yanan, Sohn, Kee-Hoon, Jones, Jonathan D. G., Holub, E. B. and Li, Xin (2015) Autoimmunity conferred by chs3-2D relies on CSA1, its adjacent TIR-NB-LRR encoding neighbour. Scientific Reports, 5 . pp. 1-7. 8792. doi:10.1038/srep08792 ISSN 2045-2322.
Zhang, Dayi, Berry, James, Zhu, Di, Wang, Yun, Chen, Yin, Jiang, Bo, Huang, Shi, Langford, Harry, Li, Guanghe, Davison, Paul A., Xu, Jian, Aries, Eriv and Huang, Wei E. (2015) Magnetic nanoparticle-mediated isolation of functional bacteria in a complex microbial community. ISME Journal, 9 . pp. 603-614. doi:10.1038/ismej.2014.161 ISSN 1751-7362.
Peavoy, Daniel, Franzke, Christian and Roberts, Gareth O. (2015) Systematic physics constrained parameter estimation of stochastic differential equations. Computational Statistics & Data Analysis, 83 . pp. 182-199. doi:10.1016/j.csda.2014.10.011 ISSN 0167-9473.
Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2015) Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium : implications for marine carbon and nitrogen cycling. The ISME Journal, 9 . pp. 760-769. doi:10.1038/ismej.2014.149 ISSN 1751-7362.
McMullan, Mark, Gardiner, Anastasia, Bailey, Kate, Kemen, Eric, Ward, Ben J., Cevik, Volkan, Robert-Seilaniantz, Alexandre, Schultz-Larsen, Torsten, Balmuth, Alexi L., Holub, E. B., Oosterhout, Cock van and Jones, Jonathan D. G. (2015) Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite. eLife, 4 . pp. 1-24. e04550. doi:10.7554/eLife.04550 ISSN 2050-084X.
Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237 ISSN 1751-7362.
Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacteriumAcaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735 ISSN 1462-2912.
Allaby, Robin G., Kistler, Logan, Gutaker, RafaΕ M., Ware, Roselyn, Kitchen, James, Smith, Oliver and Clarke, Andrew C. (2015) Archaeogenomic insights into the adaptation of plants to the human environment : pushing plantβhominin co-evolution back to the Pliocene. Journal of Human Evolution, Volume 79 . pp. 150-157. doi:10.1016/j.jhevol.2014.10.014 ISSN 0047-2484.
Wischer, Daniela, Kumaresan, Deepak, Johnston, Antonia, El Khawand, Myriam, Stephenson, Jason, Hillebrand-Voiculescu, Alexandra M., Chen, Yin and Murrell, J. C. (J. Colin) (2015) Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave. The ISME Journal, 9 . pp. 195-206. doi:10.1038/ismej.2014.102 ISSN 1751-7362.
Allaby, Robin G., Gutaker, RafaΕ M., Clarke, Andrew C., Pearson, Neil, Ware, Roselyn, Palmer, Sarah A., Kitchen, James and Smith, Oliver (2014) Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops. Philosophical Transactions of the Royal Society B: Biological Sciences, Volume 370 (Number 1660). Article number 20130377. doi:10.1098/rstb.2013.0377 ISSN 0962-8436.
Riddell, Carolyn E., Lobaton Garces, Juan D., Adams, Sally, Barribeau, Seth M., Twell, David and Mallon, Eamonn B. (2014) Differential gene expression and alternative splicing in insect immune specificity. BMC Genomics, Volume 15 (Number 1). Article number 1031. doi:10.1186/1471-2164-15-1031 ISSN 1471-2164.
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and SchΓ€fer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506 ISSN 1664-302X.
Zhu, Yijun , Jameson, Eleanor, Parslow, Rosemary A., Lidbury, Ian, Fu, Tiantian, Dafforn, Tim, SchΓ€fer, Hendrik and Chen, Yin (2014) Identification and characterization of trimethylamine N-oxide (TMAO) demethylase and TMAO permease in Methylocella silvestris BL2. Environmental Microbiology, 16 (10). pp. 3318-3330. doi:10.1111/1462-2920.12585 ISSN 1462-2912.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Harrison, Freya, Muruli, Aneesha, Higgins, Steven and Diggle, Stephen P. (2014) Development of an ex vivo porcine lung model for studying growth, virulence, and signaling of pseudomonas aeruginosa. Infection and Immunity, 82 (8). pp. 3312-3323. doi:10.1128/IAI.01554-14 ISSN 0019-9567.
Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017 ISSN 0378-1135.
Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. doi:10.1038/ismej.2014.130 ISSN 1751-7362.
Barnett, James P., Scanlan, David J. and Blindauer, Claudia A. (2014) Identification of major zinc-binding proteins from a marine cyanobacterium : insight into metal uptake in oligotrophic environments. Metallomics, Volume 6 (Number 7). pp. 1254-1268. doi:10.1039/c4mt00048j ISSN 1756-5901.
Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004 ISSN 0167-5877.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079 ISSN 0305-7453.
Hartmann, Manuela, GΓ³mez-Pereira, Paola R., Grob, Carolina, Ostrowski, Martin, Scanlan, David J. and Zubkov, Mikhail V. (2014) Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean. The ISME Journal, Volume 8 (Number 11). pp. 2280-2289. doi:10.1038/ismej.2014.56 ISSN 1751-7362.
Millard, Andrew D., Hands-Portman, Ian and Zwirglmaier, Katrin (2014) Morphotypes of virus-like particles in two hydrothermal vent fields on the East Scotia Ridge, Antarctia. Bacteriophage, Volume 4 (Number 1). Article number e28732 . doi:10.4161/bact.28732 ISSN 2159-7073.
Zhu, Yijun , Jameson, Eleanor, Cosatti, Marialuisa , SchΓ€fer, Hendrik, Rajakumar, Kumar , Bugg, Tim and Chen, Yin (2014) Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota. Proceedings of the National Academy of Sciences of the United States of America, 111 (11). pp. 4268-4273. doi:10.1073/pnas.1316569111 ISSN 0027-8424.
Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2014) Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 7). pp. 2710-2715. doi:10.1073/pnas.1317834111 ISSN 0027-8424.
Shadrinaaa, Elena and Bradshaw, Michael J. (2013) Russia's energy governance transitions and implications for enhanced cooperation with China, Japan, and South Korea. Post-Soviet Affairs, 29 (6). pp. 461-499. doi:10.1080/1060586X.2013.837635 ISSN 1938-2855 .
Datta, Samik, Bull, James C., Budge, Giles E. and Keeling, Matthew James (2013) Modelling the spread of American foulbrood in honeybees. Journal of The Royal Society Interface, Volume 10 (Number 88). Article number 20130650. doi:10.1098/rsif.2013.0650 ISSN 1742-5689.
Chapman, Sandra C., Stainforth, David Alan and Watkins, Nicholas W. (2013) On estimating local long-term climate trends. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Volume 371 (Number 1991). Article number 20120287. doi:10.1098/rsta.2012.0287 ISSN 1364-503X.
GΓ³mez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J. and Zubkov, Mikhail V. (2013) Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3). pp. 603-614. doi:10.1038/ismej.2012.126 ISSN 1751-7362.
Kirkham, Amy R., Lepère, Cécile, Jardillier, Ludwig, Not, Fabrice, Bouman, Heather, Mead, A. (Andrew) and Scanlan, David J. (2013) A global perspective on marine photosynthetic picoeukaryote community structure. The ISME Journal, Volume 7 (Number 5). pp. 922-936. doi:10.1038/ismej.2012.166 ISSN 1751-7362.
Smith, Edward M., Hoffman, Joseph I., Green, Laura E. and Amos, William (2012) Preliminary association of microsatellite heterozygosity with footrot in domestic sheep. Livestock Science, Vol.143 (No.2). pp. 293-299. doi:10.1016/j.livsci.2011.10.009 ISSN 1871-1413.
Cox, Michael J., SchΓ€fer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. doi:10.1111/j.1574-6968.2012.02624.x ISSN 03781097.
Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Burkill, Peter H., Scanlan, David J. and Zubkov, Mikhail V. (2012) Mixotrophic basis of Atlantic oligotrophic ecosystems. Proceedings of the National Academy of Sciences, Volume 109 (Number 15). pp. 5756-5760. doi:10.1073/pnas.1118179109 ISSN 0027-8424.
Kitchen, James, Moore, Jonathan D., Palmer, Sarah A. and Allaby, Robin G. (2012) MCMC-ODPR : primer design optimization using Markov Chain Monte Carlo sampling. BMC Bioinformatics, Vol.13 (No.1). p. 287. doi:10.1186/1471-2105-13-287 ISSN 1471-2105.
Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. doi:10.3389/fmicb.2012.00403 ISSN 1664-302X.
Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf and Blindauer, Claudia A. (2012) Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, Volume 3 . Article number 142. doi:10.3389/fmicb.2012.00142 ISSN 1664-302X.
Burgess, P. J., Rivas Casado, Monica, Gavu, Jerry, Mead, A. (Andrew), Cockerill, Tim, Lord, Richard, Van der Horst, Dan and Howard, D. C. (2012) A framework for reviewing the trade-offs between renewable energy, food, feed and wood production at a local level. Renewable and Sustainable Energy Reviews , Vol.16 (No.1). pp. 129-142. doi:10.1016/j.rser.2011.07.142 ISSN 13640321.
Grob, Carolina, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2011) Invariable biomass-specific primary production of taxonomically discrete picoeukaryote groups across the Atlantic Ocean. Environmental Microbiology, 13 (12). pp. 3266-3274. doi:10.1111/j.1462-2920.2011.02586.x ISSN 1462-2912.
Hartmann, Manuela, Grob, Carolina, Scanlan, David J., Martin, Adrian P., Burkill, Peter H. and Zubkov, Mikhail V. (2011) Comparison of phosphate uptake rates by the smallest plastidic and aplastidic protists in the North Atlantic subtropical gyre. FEMS Microbiology Ecology, Vol.78 (No.2). pp. 327-335. doi:10.1111/j.1574-6941.2011.01160.x ISSN 1574-6941.
Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin) (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. doi:10.1073/pnas.1112928108 ISSN 0027-8424.
Kumaresan, Deepak, Stralis-Pavese, Nancy, Abell, Guy C. J., Bodrossy, Levente and Murrell, J. C. (J. Colin) (2011) Physical disturbance to ecological niches created by soil structure alters community composition of methanotrophs. Environmental Microbiology Reports, Volume 3 (Number 5). pp. 613-621. doi:10.1111/j.1758-2229.2011.00270.x ISSN 1758-2229.
Boden, Rich, Murrell, J. C. (J. Colin) and SchΓ€fer, Hendrik (2011) Dimethylsulfide is an energy source for the heterotrophic marine bacterium Sagittula stellata. FEMS Microbiology Letters, Vol.322 (No.2). pp. 188-193. doi:10.1111/j.1574-6968.2011.02349.x ISSN 0378-1097.
Vogwill, T., Fenton, A. and Brockhurst, M. A. (2011) Coevolving parasites enhance the diversity-decreasing effect of dispersal. Biology Letters, Vol.7 (No.4). pp. 578-580. doi:10.1098/rsbl.2011.0071 ISSN 1744-9561.
Bouman, Heather A., Ulloa, Osvaldo, Barlow, Ray, Li, William K. W., Platt, Trevor, Zwirglmaier, Katrin, Scanlan, David J. and Sathyendranath, Shubha (2011) Water-column stratification governs the community structure of subtropical marine picophytoplankton. Environmental Microbiology Reports, 3 (4). pp. 473-482. doi:10.1111/j.1758-2229.2011.00241.x ISSN 1758-2229.
Carslake, David, Grant, Wyn, Green, Laura E., Cave, Jonathan A. K., Greaves, Justin, Keeling, Matthew James, McEldowney, John F., Weldegebriel, Habtu Tadesse and Medley, Graham (2011) Endemic cattle diseases : comparative epidemiology and governance. Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol.366 (No.1573). pp. 1975-1986. doi:10.1098/rstb.2010.0396 ISSN 1471-2970.
Wilkinson, Katy, Grant, Wyn, Green, Laura E., Hunter, Stephen, Jeger, Michael J., Lowe, Philip, Medley, Graham, Mills, P. R., Phillipson, Jeremy, Poppy, Guy M. and Waage, J. K. (2011) Infectious diseases of animals and plants : an interdisciplinary approach. Royal Society of London. Philosophical Transactions B. , Vol.366 (No.1573). pp. 1933-1942. doi:10.1098/rstb.2010.0415 ISSN 0962-8436.
Mills, P. R., Dehnen-Schmutz, Katharina, Ilbery, Brian W., Jeger, Michael J., Jones, G. (Glyn), Little, R. (Ruth), MacLeod, Alan, Parker, S. (Steve), Pautasso, Marco, Pietravalle, S. and Maye, Damian (2011) Integrating natural and social science perspectives on plant disease risk, management and policy formulation. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.366 (No.1573). pp. 2035-2044. doi:10.1098/rstb.2010.0411 ISSN 0962-8436.
Chandler, Dave, Bailey, Alastair, Tatchell, Mark (G. Mark), Davidson, G. (Gill), Greaves, Justin and Grant, Wyn (2011) The development, regulation and use of biopesticides for integrated pest management. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.366 (No.1573). pp. 1987-1998. doi:10.1098/rstb.2010.0390 ISSN 0962-8436.
Kirkham, Amy R., Jardillier, Ludwig, Holland, Ross, Zubkov, Mikhail V. and Scanlan, David J. (2011) Analysis of photosynthetic picoeukaryote community structure along an extended Ellett Line transect in the northern North Atlantic reveals a dominance of novel prymnesiophyte and prasinophyte phylotypes. Deep Sea Research Part I: Oceanographic Research Papers, Vol.58 (No.7). pp. 733-744. doi:10.1016/j.dsr.2011.05.004 ISSN 0967-0637.
Boden, Rich, Ferriera, S., Johnson, J., Kelly, Donovan P., Murrell, J. C. (J. Colin) and SchΓ€fer, Hendrik (2011) Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph methylophaga thiooxydans DMS010. Journal of Bacteriology, Vol.193 (No.12). pp. 3154-3155. doi:10.1128/JB.00388-11 ISSN 0021-9193.
Weynberg, Karen Dawn, Allen, Michael J., Gilg, Ilana C., Scanlan, David J. and Wilson, William H. (2011) Genome sequence of Ostreococcus tauri virus OtV-2 enlightens the role of picoeukaryote niche separation in the ocean. Journal of Virology, Vol.85 (No.9). pp. 4520-4529. doi:10.1128/JVI.02131-10 ISSN 1098-5514.
Shi, Xiao Li, Lepère, Cécile, Scanlan, David J. and Vaulot, Daniel (2011) Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PL o S One, Vol.6 (No.4). e18979 . doi:10.1371/journal.pone.0018979 ISSN 1932-6203.
Boden, Rich, Borodina, E., Wood, A. P., Kelly, Donovan P., Murrell, J. C. (J. Colin) and SchΓ€fer, Hendrik (2011) Purification and characterization of dimethylsulfide monooxygenase from hyphomicrobium sulfonivorans. Journal of Bacteriology, Vol.193 (No.5). pp. 1250-1258. doi:10.1128/JB.00977-10 ISSN 0021-9193.
Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, Anthony W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J., Hess, Wolfgang R. and Clokie, Martha R. J. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8). pp. 2269-2274. doi:10.1093/molbev/msr041 ISSN 0737-4038.
Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10 ISSN 0099-2240.
Rahman, M. Tanvir, Crombie, Andrew, Moussard, Hélène, Chen, Y. (Yin) and Murrell, J. C. (J. Colin) (2011) Acetate repression of methane oxidation by supplemental methylocella silvestris in a peat soil microcosm. Applied and Environmental Microbiology, Volume 77 (Number 12). pp. 4234-4236. doi:10.1128/AEM.02902-10 ISSN 0099-2240.
Kirkham, Amy R., Jardillier, Ludwig, Tiganescu, Ana, Pearman, John K., Zubkov, Mikhail V. and Scanlan, David J. (2011) Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic Meridional Transect. Environmental Microbiology, Volume 13 (Number 4). pp. 975-990. doi:10.1111/j.1462-2920.2010.02403.x ISSN 1462-2912.
French, Simon and Bayley, C. (2011) Public participation : comparing approaches. Journal of Risk Research, Vol.14 (No.2). pp. 241-257. doi:10.1080/13669877.2010.515316 ISSN 1366-9877.
Antony, Chakkiath Paul, Kumaresan, Deepak, Ferrando, Lucia, Boden, Rich, Moussard, Hélène, Scavino, Ana FernÑndez, Shouche, Yogesh S and Murrell, J. C. (J. Colin) (2010) Active methylotrophs in the sediments of Lonar Lake, a saline and alkaline ecosystem formed by meteor impact. ISME Journal, Volume 4 (Number 11). pp. 1470-1480. doi:10.1038/ismej.2010.70 ISSN 1751-7362.
Ho, Thien, Wang, Liang, Huang, Linfeng, Li, Zhigang, Pallett, Denise W., Dalmay, Tamas, Ohshima, Kazusato, Walsh, John A. and Wang, Hui (2010) Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Protein & Cell, Vol.1 (No.9). pp. 847-858. doi:10.1007/s13238-010-0100-4 ISSN 1674-8018 .
Bull, James C. and Bonsall, Michael B. (2010) Predators reduce extinction risk in noisy metapopulations. PL o S One, Vol.5 (No.7). doi:10.1371/journal.pone.0011635 ISSN 1932-6203.
Barker, G. C., Bayley, C., Cassidy, A., French, Simon, Hart, A., Malakar, P. K., Maule, J., Petkov, M. and Shepherd, R. (2010) Can a participatory approach contribute to food chain risk analysis? Risk Analysis, Vol.30 (No.5). pp. 766-781. doi:10.1111/j.1539-6924.2010.01385.x ISSN 0272-4332.
Oakley, Brian B., Carbonero, Franck, van der Gast, Christopher J., Hawkins, Robert J. and Purdy, Kevin J. (2010) Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations. ISME Journal, Vol.4 (No.4). pp. 488-497. doi:10.1038/ismej.2009.146 ISSN 1751-7362.
Allender, Charlotte J. and King , Graham J. (2010) Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers. BMC Plant Biology, Vol.10 (Article 54). doi:10.1186/1471-2229-10-54 ISSN 1471-2229.
Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x ISSN 1462-2912.
Jameson, Eleanor, Joint, Ian, Mann, Nicholas H. and Muehling, Martin (2010) Detailed analysis of the microdiversity of Prochlorococcus populations along a north-south Atlantic ocean transect. Environmental Microbiology, Vol.12 (No.1). pp. 156-171. doi:10.1111/j.1462-2920.2009.02057.x ISSN 1462-2912.
SchΓ€fer, Hendrik, Myronova, Natalia and Boden, Rich (2010) Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere. Journal of Experimental Botany, Vol.61 (No.2). pp. 315-334. doi:10.1093/jxb/erp355 ISSN 0022-0957.
Peavoy, Daniel and Franzke, Christian (2010) Bayesian analysis of rapid climate change during the last glacial using Greenland delta O-18 data. Climate of the Past, Volume 6 (Number 6). pp. 787-794. doi:10.5194/cp-6-787-2010 ISSN 1814-9324.
Stott, Iain, Townley, Stuart, Carslake, David and Hodgson, David J. (2010) On reducibility and ergodicity of population projection matrix models. Methods in Ecology and Evolution, Volume 1 (Number 3). pp. 242-252. doi:10.1111/j.2041-210X.2010.00032.x ISSN 2041-210X.
Hoebe, P. N., Stift, M., Holub, E. B. and Mable, Barbara K. (2010) The effect of mating system on growth of Arabidopsis lyrata in response to inoculation with the biotrophic parasite Albugo candida. Journal of Evolutionary Biology, Volume 24 (Number 2). pp. 391-401. doi:10.1111/j.1420-9101.2010.02177.x ISSN 1010-061X.
Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, SchΓ€fer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09 ISSN 0099-2240.
Carslake, David, Townley, Stuart and Hodgson, David J. (2009) Patterns and rules for sensitivity and elasticity in population projection matrices. Ecology, Vol.90 (No.11). pp. 3258-3267. doi:10.1890/08-1188.1 ISSN 0012-9658.
Shi, Xiao Li, Marie, D., Jardillier, Ludwig, Scanlan, David J. and Vaulot, Daniel (2009) Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean. PLoS One, Vol.4 (No.10). Article No. e7657. doi:10.1371/journal.pone.0007657 ISSN 1932-6203.
Cunliffe, Michael, Salter, Matthew, Mann, Paul J., Whiteley, Andrew S., Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Dissolved organic carbon and bacterial populations in the gelatinous surface microlayer of a Norwegian fjord mesocosm. FEMS Microbiology Letters, Vol.299 (No.2). pp. 248-254. doi:10.1111/j.1574-6968.2009.01751.x ISSN 0378-1097.
Hartmann, Manuela, Zubkov, Mikhail V., Martin, Adrian P., Scanlan, David J. and Burkill, Peter H. (2009) Assessing amino acid uptake by phototrophic nanoflagellates in nonaxenic cultures using flow cytometric sorting. FEMS Microbiology Letters, Vol.298 (No.2). pp. 166-173. doi:10.1111/j.1574-6968.2009.01715.x ISSN 0378-1097.
Chen, Yin, Wu, Liqin, Boden, Rich, Hillebrand, Alexandra, Kumaresan, Deepak, Moussard, Helene, Baciu, Mihai, Lu, Yahai and Murrell, J. C. (J. Colin) (2009) Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave. ISME Journal, Vol.3 (No.9). pp. 1093-1104. doi:10.1038/ismej.2009.57 ISSN 1751-7362.
Carslake, David, Townley, Stuart and Hodgson, David J. (2009) Predicting the impact of stage-specific harvesting on population dynamics. Journal of Animal Ecology, Vol.78 (No.5). pp. 1076-1085. doi:10.1111/j.1365-2656.2009.01569.x ISSN 0021-8790.
O'Dell, L. A., Klimm, K., Freitas, J. C. C., Kohn, S. C. and Smith, Mark E. (2009) (33)S MAS NMR of a disordered sulfur-doped silicate: signal enhancement via RAPT, QCPMG and adiabatic pulses. Applied Magnetic Resonance, Vol.35 (No.2). pp. 247-259. doi:10.1007/s00723-008-0159-8 ISSN 0937-9347.
Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07 ISSN 0066-4804.
Palmer, Sarah A., Moore, Jonathan D., Clapham, Alan J., Rose, Pamela and Allaby, Robin G. (2009) Archaeogenetic evidence of ancient Nubian barley evolution from six to two-row indicates local adaptation. PLoS ONE , Vol.4 (No.7). e6301. doi:10.1371/journal.pone.0006301 ISSN 1932-6203.
Cunliffe, Michael, Harrison, Emma, Salter, Matthew, Schaefer, Hendrik, Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Comparison and validation of sampling strategies for the molecular microbial analysis of surface microlayers. Aquatic Microbial Ecology, Vol.57 (No.1). pp. 69-77. doi:10.3354/ame01330 ISSN 0948-3055.
Brown, T. A., Jones, Martin K., Powell, Wayne and Allaby, Robin G. (2008) The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology & Evolution, Vol.24 (No.2). pp. 103-109. doi:10.1016/j.tree.2008.09.008 ISSN 0169-5347.
Schnippering, Mathias, Unwin, Patrick R., Hult, Johan, Laurila, Toni, Kaminski, Clemens F., Langridge, Justin M., Jones, Roderic L., Mazurenka, Mikhail and Mackenzie, Stuart R. (2008) Evanescent wave broadband cavity enhanced absorption spectroscopy using supercontinuum radiation : a new probe of electrochemical processes. Electrochemistry Communications, Vol.10 (No.12). pp. 1827-1830. doi:10.1016/j.elecom.2008.09.014 ISSN 1388-2481.
Guillou, L., Viprey, M., Chambouvet, A., Welsh, R. M., Kirkham, A. R., Massana, R., Scanlan, David J. and Worden, A. Z. (2008) Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology, Vol.10 (No.12). pp. 3349-3365. doi:10.1111/j.1462-2920.2008.01731.x ISSN 1462-2912.
Jensen, Sigmund, Neufeld, Josh D., Birkeland, Nils-Kare, Hovland, M. (Martin) and Murrell, J. C. (J. Colin) (2008) Insight into the microbial community structure of a Norwegian deep-water coral reef environment. Deep-Sea Research. Part 1: Oceanographic Research Papers, Volume 55 (Number 11). pp. 1554-1563. doi:10.1016/j.dsr.2008.06.008 ISSN 0967-0637.
Bull, James C. and Bonsall, Michael (2008) Overcompensatory population dynamic responses to environmental stochasticity. Journal of Animal Ecology, Volume 77 (Number 6). pp. 1296-1305. doi:10.1111/j.1365-2656.2008.01449.x ISSN 0021-8790.
Neufeld, Josh D. , Boden, Rich, Moussard, Hélène, SchÀfer, Hendrik and Murrell, J. C. (J. Colin) (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, Vol.74 (No.23). pp. 7321-7328. doi:10.1128/AEM.01266-08 ISSN 0099-2240.
Chen, Yin, Dumont, Marc G., Neufeld, Josh D., Bodrossy, Levente, Stralis-Pavese, Nancy, McNamara, Niall P., Ostle, Nick, Briones, Maria J. I. and Murrell, J. C. (J. Colin) (2008) Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands. Environmental Microbiology, Vol.10 (No.10). pp. 2609-2622. doi:10.1111/j.1462-2920.2008.01683.x ISSN 1462-2912.
Cunliffe, Michael, Schaefer, Hendrik, Harrison, E. (Emma), Cleave, Simon, Upstill-Goddard, R. C. (Robert C.) and Murrell, J. C. (J. Colin) (2008) Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary. ISME Journal, Volume 2 (Number 7). pp. 776-789. doi:10.1038/ismej.2008.28 ISSN 1751-7362.
Neufeld, Josh D., Chen, Yin, Dumont, Marc G. and Murrell, J. C. (J. Colin) (2008) Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environmental Microbiology, Vol.10 (No.6). pp. 1526-1535. doi:10.1111/j.1462-2920.2008.01568.x ISSN 14622912.
Dufresne, Alexis, Ostrowski, Martin, Scanlan, David J. , Garczarek, Laurence, Mazard, Sophie, Palenik, Brian P., Paulsen, Ian T., Tandeau de Marsac, Nicole, Johnson, Justin, Post, Anton F., Hess, Wolfgang R. and Partensky, FrΓ©dΓ©ric (2008) Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology, Vol.9 (No.R90). Article no.R90. doi:10.1186/gb-2008-9-5-r90 ISSN 1474-7596.
Mary, Isabelle, Garczarek, Laurence, Tarran, Glen A. , Kolowrat, Christian , Terry, Matthew J. , Scanlan, David J. , Burkill, Peter H. and Zubkov, Mikhail V. (2008) Diel rhythmicity in amino acid uptake by Prochlorococcus. Environmental Microbiology, Vol.10 (No.8). pp. 2124-2131. doi:10.1111/j.1462-2920.2008.01633.x ISSN 1462-2912.
Muhling, Martin, Woolven-Allen, John, Murrell, J. C. (J. Colin) and Joint, Ian (2008) Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities. ISME Journal, Volume 2 (Number 4). pp. 379-392. doi:10.1038/ismej.2007.97 ISSN 1751-7362.
Chen, Y. (Yin), Dumont, Marc G., McNamara, Niall P., Chamberlain, P. M. (Paul M.), Bodrossy, Levente, Stralis-Pavese, Nancy and Murrell, J. C. (J. Colin) (2008) Diversity of the active methanotrophic community in acidic peatlands as assessed by mRNA and SIP-PLFA analyses. Environmental Microbiology, Vol.10 (No.2). pp. 446-459. doi:10.1111/j.1462-2920.2007.01466.x ISSN 1462-2912.
Jameson, Eleanor, Joint, Ian, Mann, Nicholas H. and Muehling, Martin (2008) Application of a novel rpoC1-RFLP approach reveals that marine Prochlorococcus populations in the atlantic gyres are composed of greater microdiversity than previously described. Microbial Ecology, Vol.55 (No.1). pp. 141-151. doi:10.1007/s00248-007-9259-5 ISSN 0095-3628.
Hery, Marina, Singer, Andrew C., Kumaresan, Deepak, Bodrossy, Levente, Stralis-Pavese, Nancy, Prosser, James I. (James Ivor), Thompson, Ian P. and Murrell, J. C. (J. Colin) (2008) Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. The ISME Journal, Vol.2 (No.1). pp. 92-104. doi:10.1038/ismej.2007.66 ISSN 1751-7362.
Zwirglmaier, Katrin, Jardillier, Ludwig, Ostrowski, Martin, Mazard, Sophie, Garczarek, Laurence, Vaulot, Daniel, Not, Fabrice, Massana, Ramon, Ulloa, Osvaldo and Scanlan, David J. (2008) Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environmental Microbiology, Vol.10 (No.1). pp. 147-161. doi:10.1111/j.1462-2920.2007.01440.x ISSN 14622912.
Mary, Isabelle, Tarran, Glen A. , Warwick, Phillip E., Terry, Matthew J. , Scanlan, David J. , Burkill, Peter H. and Zubkov, Mikhail V. (2008) Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean. FEMS Microbiology Ecology, Vol.63 (No.1). pp. 36-45. doi:10.1111/j.1574-6941.2007.00414.x ISSN 0168-6496.
Bayley, Clare and French, Simon (2008) Designing a participatory process for stakeholder involvement in a societal decision. Group Decision and Negotiation, Vol.17 (No.3). pp. 195-210. doi:10.1007/s10726-007-9076-8 ISSN 0926-2644.
McDonald, Sarah M., Sarno, Diana, Scanlan, David J. and Zingone, Adriana (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology, Volume 50 (Number 1). pp. 75-89. doi:10.3354/ame01148 ISSN 0948-3055.
Six, Christophe, Thomas, Jean-Claude , Garczarek, Laurence, Ostrowski, Martin, Dufresne, Alexis, Blot, Nicolas, Scanlan, David J. and Partensky, FrΓ©dΓ©ric (2007) Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biology, Vol.8 (No.12). doi:10.1186/gb-2007-8-12-r259 ISSN 1474-7596.
Thomas, P. J. (Peter J.) and Linden, P. F. (2007) Rotating gravity currents: small-scale and large-scale laboratory experiments and a geostrophic model. Journal of Fluid Mechanics, Vol.57 . pp. 35-65. doi:10.1017/S0022112007004739 ISSN 0022-1120.
Mahenthiralingam, Eshwar, Baldwin, Adam, Drevinek, Pavel, Vanlaere, Elke, Vandamme, Peter, LiPuma, John J. and Dowson, Christopher G. (2006) Multilocus sequence typing breathes life into a microbial metagenome. PLoS One, Vol.1 (No.1). doi:10.1371/journal.pone.0000017 ISSN 1932-6203.
Clokie, Martha R. J., Millard, Andrew D., Mehta, Jaytry Y. and Mann, Nicholas H. (2006) Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 499-505. doi:10.1017/S0025315406013415 ISSN 0025-3154.
Millard, Andrew D. and Mann, Nicholas H. (2006) A temporal and spatial investigation of cyanophage abundance in the Gulf of Aqaba Red Sea. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 507-515. doi:10.1017/S0025315406013415 ISSN 0025-3154.
Clokie, Martha R. J., Shan, Jinyu, Bailey, Shaun, Jia, Ying, Krisch, Henry M., West, Stephen and Mann, Nicholas H. (2006) Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium. Environmental Microbiology, Vol.8 (No.5). pp. 827-835. doi:10.1111/j.1462-2920.2005.00969.x ISSN 1462-2912.
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Somerfield, Paul J., Muhling, Martin, Fuller, Nicholas J., Millard, Andrew D., Dominique, Marie, Wilson, W. H., Scanlan, David J., Post, Anton F., Joint, Ian and Mann, Nicholas H. (2005) Genetic diversity of marine Synechococcus and co-occurring cyanophage communities : evidence for viral control of phytoplankton. Environmental Microbiology, Volume 7 (Number 4). pp. 499-508. doi:10.1111/j.1462-2920.2005.00713.x ISSN 1462-2912.
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Journal Item
Stainforth, David A., Chapman, Sandra C. and Watkins, Nicholas W. (2014) Mapping climate change in European temperature distributions. Environmental Research Letters, Volume 8 (Number 3). Article number 034031. doi:10.1088/1748-9326/8/3/034031
Cunliffe, Michael and Murrell, J. C. (J. Colin) (2010) Eukarya 18S rRNA gene diversity in the sea surface microlayer: implications for the structure of the neustonic microbial loop. ISME Journal, Vol.4 (No.3). pp. 455-458. doi:10.1038/ismej.2009.133
Cunliffe, Michael and Murrell, J. C. (J. Colin) (2009) The sea-surface microlayer is a gelatinous biofilm. ISME Journal, Vol.3 (No.9). pp. 1001-1003. doi:10.1038/ismej.2009.69
Scanlan, David J. , Ostrowski, Martin, Mazard, Sophie, Dufresne, Alexis, Garczarek, Laurence, Hess, W. R., Post, A. F., Hagemann, Martin, Paulsen, I. and Partensky, F. (2009) Ecological genomics of marine icocyanobacteria. Microbiology and Molecular Biology Reviews, Vol.73 (No.2). pp. 249-299. doi:10.1128/MMBR.00035-08
Brown, T. A., Jones, Martin K., Powell, Wayne and Allaby, Robin G. (2009) The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology & Evolution, Vol.24 (No.2). pp. 103-109. doi:10.1016/j.tree.2008.09.008
Mahenthiralingam, Eshwar, Baldwin, A. (Adam) and Dowson, Christopher G. (2008) Burkholderia cepacia complex bacteria : opportunistic pathogens with important natural biology. Journal of Applied Microbiology, Vol.104 (No.6). pp. 1539-1551. doi:10.1111/j.1365-2672.2007.03706.x
