Journal Article

Agoti, Charles N., Gitahi, Caroline W., Medley, Graham, Cane, Patricia and Nokes, D. James. (2013) Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya. Influenza and Other Respiratory Viruses, Volume 7 (Number 6). pp. 1008-1012. ISSN 1750-2640

Agoti, Charles N., Mayieka, Lillian M., Otieno, James R., Ahmed, Jamal A., Fields, Barry S., Waiboci, Lilian W., Nyoka, Raymond, Eidex, Rachel B., Marano, Nina, Burton, Wagacha, Montgomery, Joel M., Breiman, Robert F. and Nokes, D. James. (2014) Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases, Volume 14 (Number 1). Article number 178. ISSN 1471-2334

Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James. (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. ISSN 0022-1899

Atkinson, Nicky J., Witteveldt, Jeroen, Evans, D. J. (David J.) and Simmonds, Peter. (2014) The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication. Nucleic Acids Research, Volume 42 (Number 7). pp. 4527-4545. ISSN 0305-1048

Black, Andrew J., House, Thomas A., Keeling, Matthew James and Ross, Joshua V.. (2013) Epidemiological consequences of household-based antiviral prophylaxis for pandemic influenza. Journal of Royal Society. Interface, Volume 10 (Number 81). Article no. 20121019. ISSN 1742-5689

Bryan, Michael J., Burroughs, Nigel John, Spence, Edward M., Clokie, Martha R. J., Mann, Nicholas H. and Bryan, Samantha J.. (2008) Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PL o S One, Vol.3 (No.4). ISSN 1932-6203

Carson, Connor, Antoniou, Maria, Begoña Ruiz-Argüello, Maria, Alcami, Antonio, Christodoulou, Vasiliki , Messaritakis, Ippokratis, Blackwell, Jenefer M. and Courtenay, Orin. (2008) A prime/boost DNA/Modified vaccinia virus Ankara vaccine expressing recombinant Leishmania DNA encoding TRYP is safe and immunogenic in outbred dogs, the reservoir of zoonotic visceral leishmaniasis. Vaccine, Vol.27 (No.7). pp. 1080-1086. ISSN 0264-410X

Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik. (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. ISSN 1664-302X

Cleveland, S. Matthew, Taylor, H. P. and Dimmock, N. J.. (1997) Selection of neutralizing antibody escape mutants with type A influenza virus HA-specific polyclonal antisera: possible significance for antigenic drift. Epidemiology and Infection, Vol.118 (No.2). pp. 149-154. ISSN 0950-2688

Clokie, Martha R. J., Millard, Andrew D. and Mann, Nicholas H.. (2010) T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virology Journal, Volume 7 . Article number 291. ISSN 1743-422X

Collins, K. R. and Easton, A. J. (Andrew J.). (1995) Sequence variation in the haemagglutinin-neuraminidase gene of human parainfluenza virus type 3 isolates in the UK. Epidemiology and Infection, Vol.114 (No.3). pp. 493-500. ISSN 0950-2688

Courtenay, Orin, Carson, Connor, Calvo-Bado, Leo A., Garcez, Lourdes M. and Quinnell, Rupert J.. (2014) Heterogeneities in leishmania infantum infection : using skin parasite burdens to identify highly infectious dogs. PLoS Neglected Tropical Diseases, Volume 8 (Number 1). Article number e2583. ISSN 1935-2735

Cox, M. J., Azevedo, R. S., Nokes, D. James, Beards, G. M., McCrae, Malcolm A., Massad, Eduardo and Medley, Graham. (1998) Seroepidemiology of group A rotavirus in suburban São Paulo, Brazil. Epidemiology and Infection, Vol.120 . pp. 327-334. ISSN 0950-2688

Crispin, Max, Harvey, David J., Bitto, David, Halldorsson, Steinar, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T. and Bowden, Thomas A.. (2014) Uukuniemi Phlebovirus assembly and secretion leave a functional imprint on the Virion Glycome. Journal of Virology, Volume 88 (Number 17). pp. 10244-10251. ISSN 0022-538X

Dibben, Oliver and Easton, A. J. (Andrew J.). (2007) Mutational analysis of the gene start sequences of pneumonia virus of mice. Virus Research, Vol.130 (No.1-2). pp. 303-309. ISSN 0168-1702

Dimmock, N. J., Dove, Brian K., Scott, P. D. (Paul D.), Meng, Bo, Taylor, Irene, Cheung, Linda, Hallis, Bassam, Marriott, Anthony C., Carroll, Miles W. and Easton, A. J. (Andrew J.). (2012) Cloned defective interfering influenza virus protects ferrets from pandemic 2009 influenza A virus and allows protective immunity to be established. PLoS ONE, Vol.7 (No.12). e49394. ISSN 1932-6203

Easton, A. J. (Andrew J.) and Eglin, R. P.. (1989) Epidemiology of parainfluenza virus type 3 in England and Wales over a ten-year period. Epidemiology and Infection, Vol.102 (No.3). pp. 531-535. ISSN 0950-2688

Edmunds, W. John , Medley, Graham, Nokes, D. James, O'Callaghan, C. J., Whittle, H. C. and Hall, A. J. (Andrew James). (1996) Epidemiological patterns of hepatitis B virus (HBV) in highly endemic areas. Epidemiology and Infection, Vol.117 (No.2). pp. 313-325. ISSN 0950-2688

Gay, N. J., Vyse, A. J., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James. (2003) Improving sensitivity of oral fluid testing in IgG prevalence studies: application of mixture models to a rubella antibody survey. Epidemiology and Infection, Vol.13 (No.2). pp. 285-291. ISSN 0950-2688

Haj Kassem, Amin A. and Walsh, John A.. (2008) Characterising resistance to Turnip mosaic virus (TuMV) in Turnip (Brassica rapa rapa). Arab Journal of Plant Protection, Vol.26 (No.2). pp. 168-172. ISSN 0255-982X

Hollingsworth, T. Déirdre, Laeyendecker, Oliver, Shirreff, George, Donnelly, Christl A., Serwadda, David, Wawer, Maria, Kiwanuka, Noah, Nalugoda, Fred, Collinson-Streng, Aleisha, Ssempijja, Victor, Hanage, William P., Quinn, Thomas C., Gray, Ronald H. and Fraser, Christophe. (2010) HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda. PLoS Pathogens, Volume 6 (Number 5). Article no. e1000876. ISSN 1553-7374

Leppard, Keith, Emmott, Edward, Cortese, Marc S. and Rich, Tina. (2009) Adenovirus type 5 E4 Orf3 protein targets promyelocytic leukaemia (PML) protein nuclear domains for disruption via a sequence in PML isoform II that is predicted as a protein interaction site by bioinformatic analysis. Journal of General Virology, Vol.90 (No.1). pp. 95-104. ISSN 0022-1317

. (2010) The genome of a pathogenic rhodococcus : cooptive virulence underpinned by key gene acquisitions. PLoS Genetics, Volume 6 (Number 9). Article number e1001145. ISSN 1553-7390

Lewsey, Mathew, Surette, Monique, Robertson, Fiona C. , Ziebell, Heiko, Choi, Sun Hee , Ryu, Ki Hyun , Canto, Tomas, Palukaitis, Peter, Payne, Tina, Walsh, John A. and Carr, John P.. (2009) The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant - Microbe Interactions, Vol.22 (No.6). pp. 642-654. ISSN 0894-0282

Lo, Angela K. F., Dawson, Christopher W., Lo, Kwok W., Yu, Yanxing and Young, Lawrence S.. (2010) Upregulation of Id1 by Epstein-Barr Virus-encoded LMP1 confers resistance to TGFβ-mediated growth inhibition. Molecular Cancer, Vol.9 (No.1). p. 155. ISSN 1476-4598

Lozano, Jean-Claude, Schatt, Philippe, Botebol, Hugo, Verge, Valerie, Lesuisse, Emmanuel, Blain, Stephane, Carré, Isabelle A. and Bouget, Francois-Yves. (2014) Efficient gene targeting and foreign DNA removal by homologous recombination in the picoeukaryote Ostreococcus. Plant Journal, Volume 78 (Number 6). pp. 1073-1083. ISSN 0960-7412

Lythgoe, Katrina A., Pellis, Lorenzo and Fraser, Christophe. (2013) Is HIV short-sighted? Insights from a multistrain nested model. Evolution, Volume 67 (Number 10). pp. 2769-2782. ISSN 0014-3820

Marusic, Carla, Nuttall, James, Buriani, Giampaolo , Lico, Chiara, Lombardi, Raffaele , Baschieri , Selene, Benvenuto, Eugenio and Frigerio, Lorenzo. (2007) Expression, intracellular targeting and purification of HIV Nef variants in tobacco cells. BMC Biotechnology, Vol.7 (No.12). ISSN 1472-6750

McFadden, Nora, Arias, Armando, Dry, Inga, Bailey, Dalan, Witteveldt, Jeroen, Evans, D. J. (David J.), Goodfellow, Ian and Simmonds, Peter. (2013) Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Research, Volume 41 (Number 12). pp. 6316-6331. ISSN 0305-1048

Menz, Beatrice, Sester, Martina, Koebernick, Katja, Schmid, Ralf and Burgert, Hans-Gerhard . (2008) Structural analysis of the adenovirus type 2 E3/19K protein using mutagenesis and a panel of conformation-sensitive monoclonal antibodies. Molecular Immunology, Vol.46 (No.1). pp. 16-26. ISSN 0161-5890

Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, D. J. (David J.) and Ryabov, Eugene V.. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. ISSN 0022-1317

Morris, S. J. (Susan J.), Farley, Daniel C. and Leppard, Keith. (2010) Generation of cell lines to complement Adenovirus vectors using recombination-mediated cassette exchange. BioMed Central Ltd., Vol.10 (No.92). Article No.92. ISSN 1472-6750

Morris, S. J. (Susan J.) and Leppard, Keith. (2009) Adenovirus serotype 5 L4-22K and L4-33K proteins have distinct functions in regulating late gene expression. Journal of Virology, Vol.83 (No.7). pp. 3049-3058. ISSN 0022-538X

Morris, S. J. (Susan J.), Scott, Gillian E. and Leppard, Keith. (2010) Adenovirus late phase infection is controlled by a novel L4 promoter. Journal of Virology, Vol.84 (No.14). pp. 7096-7104. ISSN 0022-538X

Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Kibirige, N., Kipkoech, J., Cane, Patricia A., Medley, Graham and Nokes, D. James. (2014) Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiology and Infection . ISSN 0950-2688 (In Press)

Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Lewa, Clement, Cane, Patricia, Medley, Graham and Nokes, D. James. (2014) The source of respiratory syncytial virus infection in infants : a household cohort study in rural Kenya. Journal of Infectious Diseases, Volume 209 (Number 11). pp. 1685-1692. ISSN 0022-1899

Nokes, D. James, Peenze, Ina, Netshifhefhe, Lufuno, Abwao, John, De Beer, Mariet C., Seheri, Mapaseka, Williams, Thomas N., Page, Nicola and Steele, Duncan. (2010) Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. The Journal of Infectious Diseases, Vol.202 (Suppl.1). S180-S186. ISSN 0022-1899

Outlaw, M. C. and Dimmock, N. J.. (1991) Insights into neutralization of animal viruses gained from study of influenza virus. Epidemiology and Infection, Vol.106 (No.2). pp. 205-220. ISSN 0950-2688

Owen, Thomas J., O'Neil, John D., Dawson, Christopher W., Hu, Chunfang, Chen, Xiaoyi, Yao, Yunhong, Wood, Victoria H. J., Mitchell, Louise E., White, Robert J., 1963-, Young, Lawrence S. and Arrand, J. R. (John R.). (2010) Epstein-Barr virus-encoded EBNA1 enhances RNA polymerase III-dependent EBER expression through induction of EBER-associated cellular transcription factors. Molecular Cancer, Vol.9 (No.1). p. 241. ISSN 1476-4598

Scott, P. D. (Paul D.), Meng, Bo, Marriott, Anthony C., Easton, A. J. (Andrew J.) and Dimmock, N. J.. (2011) Defective interfering virus protects elderly mice from influenza. Virology Journal, Vol.8 (No.212). ISSN 1743-422X

Sester, Martina, Ruszics, Zsolt , Mackley, Emma and Burgert, Hans-Gerhard. (2013) The transmembrane domain of the adenovirus E3/19K protein acts as an ER retention signal and contributes to intracellular sequestration of MHC class I molecules. Journal of Virology, Volume 87 (Number 11). 6101-6117.. ISSN 0022-538X

Stock, Emily, Marriott, Anthony C. and Easton, A. J. (Andrew J.). (2014) The host-range tdCE phenotype of Chandipura virus is determined by mutations in the polymerase gene. Journal of General Virology, Volume 95 (Number 1). pp. 38-43. ISSN 0022-1317

Syed, Farhatullah and McCrae, Malcolm A.. (2009) Interactions in vivo between the Vif protein of HIV-1 and the precursor (Pr55GAG) of the virion nucleocapsid proteins. Archives of Virology, Vol.15 (No.11). pp. 1797-1805. ISSN 0304-8608

Tuplin, Andrew, Evans, D. J. (David J.), Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S.. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. ISSN 0305-1048

Tuplin, Andrew, Struthers, Madeleine, Cook, Jonathan P., Bentley, Kirsten and Evans, D. J. (David J.). (2015) Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail. Nucleic Acids Research . ISSN 0305-1048 (In Press)

Valentine, Robert, Dawson, Christopher W., Hu, Chunfang, Shah, Khilan M., Owen, Thomas J., Date, Kathryn L., Maia, Sonia P., Shao, Jianyong, Arrand, J. R. (John R.), Young, Lawrence S. and O'Neil, John D.. (2010) Epstein-Barr virus-encoded EBNA1 inhibits the canonical NF-κB pathway in carcinoma cells by inhibiting IKK phosphorylation. Molecular Cancer, Vol.9 (No.1). p. 1. ISSN 1476-4598

Wise, Helen M., Barbezange, Cyril, Jagger, Brett W., Dalton, Rosa Maria, Gog, Julia R., Curran, Martin D., Taubenberger, Jeffery, Anderson, Emma C. and Digard, Paul. (2011) Overlapping signals for translational regulation and packaging of influenza A virus segment 2. Nucleic Acids Research, Vol.39 (No.17). pp. 7775-7790. ISSN 1362-4962

Witteveldt, Jeroen, Blundell, Richard, Maarleveld, Joris J., McFadden, Nora, Evans, D. J. (David J.) and Simmonds, Peter. (2013) The influence of viral RNA secondary structure on interactions with innate host cell defences. Nucleic Acids Research, Volume 42 (Number 5). pp. 3314-3329. ISSN 0305-1048

Wright, Jordan, 1983- and Leppard, Keith. (2013) The human adenovirus 5 L4 promoter is activated by cellular stress response protein p53. Journal of Virology, Volume 87 (Number 21). pp. 11617-11625. ISSN 0022-538X

van Helden, Mary J. G., Kooten, Peter J. S. van, Bekker, Cornelis P. J., Gröne, Andrea, Topham, David J., Easton, A. J. (Andrew J.), Boog, Claire J. P., Busch, Dirk H., Zaiss, Dietmar M. W. and Sijts, Alice J. A. M.. (2012) Pre-existing virus-specific CD8+ T-cells provide protection against pneumovirus-induced disease in mice. Vaccine, Vol.30 (No.45). pp. 6382-6388. ISSN 0264-410X

Thesis or Dissertation

Asare-Bediako, Elvis (2011) Brassicaceae : Turnip yellows virus interactions. PhD thesis, University of Warwick.

Chan, Jacqueline (2010) Bacteriophages of marine Roseobacter. PhD thesis, University of Warwick.

Heath, Richard Rhead (1996) The role of the cell-mediated immune response to rotavirus infection. PhD thesis, University of Warwick.

Hornsey, Crystal A. (2012) The function of extensive structured RNA in the evasion of host anti-virus responses. PhD thesis, University of Warwick.

Kapoor, Sanjay, 1959- (1995) Molecular determinants of rotavirus virulence. PhD thesis, University of Warwick.

Ling, Roger, 1962- (1988) Polypeptides of murine and avian pneumoviruses. PhD thesis, University of Warwick.

Lowry, Kym (2011) The molecular determinants and consequences of recombination in the evolution of human enteroviruses. PhD thesis, University of Warwick.

Martin, Stuart, 1983- (2010) The potential of a novel Adenovirus vector for vaccination. PhD thesis, University of Warwick.

Puxty, Richard John (2014) The role of light in photosynthetic cyanophages : from physiology to gene expression. PhD thesis, University of Warwick.

Rainsford, Edward, 1979- (2005) Functional studies on the rotavirus non-structural proteins NSP5 and NSP6. PhD thesis, University of Warwick.

Sadigh, Yashar Mohammadzadeh (2011) A reverse genetics approach to study the pathogenesis of pneumonia virus of mice. PhD thesis, University of Warwick.

Stock, Emily (2014) Characterisation of host-range determinants in Chandipura virus. PhD thesis, University of Warwick.

Terry, Helen Elizabeth (2010) The development of recombinant Adenoviral vaccines to target pneumovirus infection. PhD thesis, University of Warwick.

Weynberg, Karen Dawn (2009) Isolation and characterisation of novel viruses infecting marine phytoplankton. PhD thesis, University of Warwick.

Wilkinson, Gavin William Grahame (1987) Regulation of human cytomegalovirus strain AD169 gene expression. PhD thesis, University of Warwick.

Zhang, Fan, (Researcher in life sciences) (2012) The role of NSP1 in rotavirus pathogenesis. PhD thesis, University of Warwick.