Journal Article

(2016) Taxonomy of the order Mononegavirales : update 2016. Archives of Virology, 161 (8). pp. 2351-2360. doi:10.1007/s00705-016-2880-1

Agoti, Charles N., Gitahi, Caroline W., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya. Influenza and Other Respiratory Viruses, Volume 7 (Number 6). pp. 1008-1012. doi:10.1111/irv.12131

Agoti, Charles N., Mayieka, Lillian M., Otieno, James R., Ahmed, Jamal A., Fields, Barry S., Waiboci, Lilian W., Nyoka, Raymond, Eidex, Rachel B., Marano, Nina, Burton, Wagacha, Montgomery, Joel M., Breiman, Robert F. and Nokes, D. James (2014) Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases, Volume 14 (Number 1). Article number 178. doi:10.1186/1471-2334-14-178

Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. doi:10.1093/infdis/jis570

Agoti, Charles N., Otieno, James R., Ngama, Mwanajuma, Mwihuri, Alexander G., Medley, Graham, Cane, Patricia A., Nokes, D. James and Kirkegaard, K. (2015) Successive respiratory syncytial virus epidemics in local populations arise from multiple variant introductions, providing insights into virus persistence. Journal of Virology, 89 (22). pp. 11630-11642. doi:10.1128/JVI.01972-15

Alford, Justine E., Marongiu, Michela, Watkins, Gemma L. and Anderson, Emma C. (2016) Human immunodeficiency virus type 2 (HIV-2) Gag is trafficked in an AP-3 and AP-5 dependent manner. PLoS One, 11 (7). e0158941. doi:10.1371/journal.pone.0158941

Aller, Sean, Scott, Andrew, Sarkar-Tyson, Mitali and Soyer, Orkun S. (2018) Integrated human-virus metabolic stoichiometric modelling predicts host-based antiviral targets against Chikungunya, Dengue and Zika viruses. Journal of The Royal Society Interface, 15 (146). 20180125. doi:10.1098/rsif.2018.0125

Arzt, Jonathan, Branan, Matthew A., Delgado, Amy H., Yadav, Shankar, Moreno-Torres, Karla I., Tildesley, Michael J. and Stenfeldt, Carolina (2019) Quantitative impacts of incubation phase transmission of foot-and-mouth disease virus. Scientific Reports, 9 (1). 2707. doi:10.1038/s41598-019-39029-0

Atkinson, Nicky J., Witteveldt, Jeroen, Evans, David J. and Simmonds, Peter (2014) The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication. Nucleic Acids Research, Volume 42 (Number 7). pp. 4527-4545. doi:10.1093/nar/gku075

Atwan, Zeenah, Wright, Jordan L., Leppard, Keith and Woodman, Andrew (2016) Promyelocytic leukemia protein isoform II inhibits infection by human adenovirus type 5 through effects on HSP70 and the interferon response. Journal of General Virology, 97 . pp. 1955-1967. doi:10.1099/jgv.0.000510

Avramucz, Akos, Møller-Olsen, Christian, Grigonyte, Aurelija M., Paramalingam, Yanahan, Millard, Andrew, Sagona, Antonia P. and Feher, Tamas (2021) Analysing parallel strategies to alter the host specificity of bacteriophage T7. Biology, 10 (6). 556. doi:10.3390/biology10060556

Black, Andrew J., House, Thomas A., Keeling, Matthew James and Ross, Joshua V. (2013) Epidemiological consequences of household-based antiviral prophylaxis for pandemic influenza. Journal of Royal Society. Interface, Volume 10 (Number 81). Article no. 20121019. doi:10.1098/rsif.2012.1019

Bryan, Michael J., Burroughs, Nigel John, Spence, Edward M., Clokie, Martha R. J., Mann, Nicholas H. and Bryan, Samantha J. (2008) Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PL o S One, Vol.3 (No.4). doi:10.1371/journal.pone.0002048

Carson, Connor, Antoniou, Maria, Begoña Ruiz-Argüello, Maria, Alcami, Antonio, Christodoulou, Vasiliki , Messaritakis, Ippokratis, Blackwell, Jenefer M. and Courtenay, Orin (2008) A prime/boost DNA/Modified vaccinia virus Ankara vaccine expressing recombinant Leishmania DNA encoding TRYP is safe and immunogenic in outbred dogs, the reservoir of zoonotic visceral leishmaniasis. Vaccine, Vol.27 (No.7). pp. 1080-1086. doi:10.1016/j.vaccine.2008.11.094

Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506

Cleveland, S. Matthew, Taylor, H. P. and Dimmock, N. J. (1997) Selection of neutralizing antibody escape mutants with type A influenza virus HA-specific polyclonal antisera: possible significance for antigenic drift. Epidemiology and Infection, Vol.118 (No.2). pp. 149-154. doi:10.1017/S0950268896007303

Clokie, Martha R. J., Millard, Andrew D. and Mann, Nicholas H. (2010) T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virology Journal, Volume 7 . Article number 291. doi:10.1186/1743-422X-7-291

Collins, K. R. and Easton, A. J. (Andrew J.) (1995) Sequence variation in the haemagglutinin-neuraminidase gene of human parainfluenza virus type 3 isolates in the UK. Epidemiology and Infection, Vol.114 (No.3). pp. 493-500. doi:10.1017/S0950268800052201

Courtenay, Orin, Carson, Connor, Calvo-Bado, Leo A., Garcez, Lourdes M. and Quinnell, Rupert J. (2014) Heterogeneities in leishmania infantum infection : using skin parasite burdens to identify highly infectious dogs. PLoS Neglected Tropical Diseases, Volume 8 (Number 1). Article number e2583. doi:10.1371/journal.pntd.0002583

Cox, M. J., Azevedo, R. S., Nokes, D. James, Beards, G. M., McCrae, Malcolm A., Massad, Eduardo and Medley, Graham (1998) Seroepidemiology of group A rotavirus in suburban São Paulo, Brazil. Epidemiology and Infection, Vol.120 . pp. 327-334. doi:10.1017/S0950268898008759

Crispin, Max, Harvey, David J., Bitto, David, Halldorsson, Steinar, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T. and Bowden, Thomas A. (2014) Uukuniemi Phlebovirus assembly and secretion leave a functional imprint on the Virion Glycome. Journal of Virology, Volume 88 (Number 17). pp. 10244-10251. doi:10.1128/JVI.01662-14

Data, Samik, Pink, Joshua, Medley, Graham, Petrou, Stavros, Staniszewska, Sophie, Underwood, Martin, Sonnenberg, Pam and Keeling, Matthew James (2019) Assessing the cost-effectiveness of HPV vaccination strategies for adolescent girls and boys in the UK. BMC Infectious Diseases, 19 . 552 . doi:10.1186/s12879-019-4108-y

Dibben, Oliver and Easton, A. J. (Andrew J.) (2007) Mutational analysis of the gene start sequences of pneumonia virus of mice. Virus Research, Vol.130 (No.1-2). pp. 303-309. doi:10.1016/j.virusres.2007.06.009

Dimmock, N. J., Dove, Brian K., Scott, P. D. (Paul D.), Meng, Bo, Taylor, Irene, Cheung, Linda, Hallis, Bassam, Marriott, Anthony C., Carroll, Miles W. and Easton, A. J. (Andrew J.) (2012) Cloned defective interfering influenza virus protects ferrets from pandemic 2009 influenza A virus and allows protective immunity to be established. PLoS ONE, Vol.7 (No.12). e49394. doi:10.1371/journal.pone.0049394

Dimmock, N. J. and Easton, A. J. (Andrew J.) (2015) Cloned defective interfering influenza RNA and a 7 possible pan-specific treatment of respiratory virus 8 diseases. Viruses , 7 (7). pp. 3768-3788. doi:10.3390/v7072796

Easton, A. J. (Andrew J.) and Eglin, R. P. (1989) Epidemiology of parainfluenza virus type 3 in England and Wales over a ten-year period. Epidemiology and Infection, Vol.102 (No.3). pp. 531-535. doi:10.1017/S0950268800030247

Edmunds, W. John , Medley, Graham, Nokes, D. James, O'Callaghan, C. J., Whittle, H. C. and Hall, A. J. (Andrew James) (1996) Epidemiological patterns of hepatitis B virus (HBV) in highly endemic areas. Epidemiology and Infection, Vol.117 (No.2). pp. 313-325. doi:10.1017/S0950268800001497

Evans, Jennifer S., Wu, Guanghui, Selden, David, Buczkowski, Hubert, Thorne, Leigh, Fooks, Anthony R. and Banyard, Ashley C. (2018) Utilisation of chimeric lyssaviruses to assess vaccine protection against highly divergent lyssaviruses. Viruses , 10 (3). 130. doi:10.3390/v10030130

Gay, N. J., Vyse, A. J., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James (2003) Improving sensitivity of oral fluid testing in IgG prevalence studies: application of mixture models to a rubella antibody survey. Epidemiology and Infection, Vol.13 (No.2). pp. 285-291. doi:10.1017/S0950268802008051

Gibson, Matthew I. (2016) Coating the flu with sticky polymers to look for new drugs. ACS Central Science, 2 (10). pp. 682-684. doi:10.1021/acscentsci.6b00301

Gould, Phillip S., Easton, A. J. (Andrew J.) and Dimmock, N. J. (2017) Live attenuated influenza vaccine contains substantial and unexpected amounts of defective viral genomic RNA. Viruses , 9 (10). 269. doi:10.3390/v9100269

Haj Kassem, Amin A. and Walsh, John A. (2008) Characterising resistance to Turnip mosaic virus (TuMV) in Turnip (Brassica rapa rapa). Arab Journal of Plant Protection, Vol.26 (No.2). pp. 168-172.

Hilton, Joe and Keeling, Matt J. (2020) Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. PLoS Computational Biology, 16 (7). e1008031. doi:10.1371/journal.pcbi.1008031

Hollingsworth, T. Déirdre, Laeyendecker, Oliver, Shirreff, George, Donnelly, Christl A., Serwadda, David, Wawer, Maria, Kiwanuka, Noah, Nalugoda, Fred, Collinson-Streng, Aleisha, Ssempijja, Victor, Hanage, William P., Quinn, Thomas C., Gray, Ronald H. and Fraser, Christophe (2010) HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda. PLoS Pathogens, Volume 6 (Number 5). Article no. e1000876. doi:10.1371/journal.ppat.1000876

Kamau, Everlyn, Agoti, Charles N., Lewa, Clement S., Oketch, John, Owor, Betty E., Otieno, Grieven P., Bett, Anne, Cane, Patricia A. and Nokes, D. James (2017) Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. Journal of clinical virology . doi:10.1016/j.jcv.2016.12.011

Kamau, Everlyn, Agoti, Charles N., Ngoi, Joyce M., de Laurent, Zaydah R., Gitonga, John, Cotten, Matthew, Phan, My V. T., Nokes, D. James, Delwart, Eric, Sanders, Eduard, Warimwe, George M. and Dunning Hotopp, Julie C. (2019) Complete genome sequences of dengue virus type 2 strains from Kilifi, Kenya. Microbiology Resource Announcements, 8 (4). e01566-18. doi:10.1128/MRA.01566-18

Kamau, Everlyn , Otienoa, James R, Lewa, Clement S., Mwema , Anthony , Murunga, Nickson , Nokes, D. James and Agoti , Charles N. (2020) Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on. Scientific Reports, 10 . 21176 . doi:10.1038/s41598-020-78234-0

King, Jason S., Humphreys, Daniel, Rohn, Jennifer L., Unnikrishnan, Meera, Gutierrez, Maximilano G. and Mostowy, Serge (2020) The great host-pathogen war : U.K. cellular microbiology meeting 2020. Cellular Microbiology, 22 (11). e13248. doi:10.1111/cmi.13248

Lambisia, Arnold W., Phan, My V. T., de Laurent, Zaydah R., Cotten, Matthew, Nokes, D. James and Agoti, Charles N. (2021) Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019. Microbiology Resource Announcements, 10 (15). e00162-21. doi:10.1128/MRA.00162-21

Leppard, Keith, Emmott, Edward, Cortese, Marc S. and Rich, Tina (2009) Adenovirus type 5 E4 Orf3 protein targets promyelocytic leukaemia (PML) protein nuclear domains for disruption via a sequence in PML isoform II that is predicted as a protein interaction site by bioinformatic analysis. Journal of General Virology, Vol.90 (No.1). pp. 95-104. doi:10.1099/vir.0.005512-0

(2010) The genome of a pathogenic rhodococcus : cooptive virulence underpinned by key gene acquisitions. PLoS Genetics, Volume 6 (Number 9). Article number e1001145. doi:10.1371/journal.pgen.1001145

Lewsey, Mathew, Surette, Monique, Robertson, Fiona C. , Ziebell, Heiko, Choi, Sun Hee , Ryu, Ki Hyun , Canto, Tomas, Palukaitis, Peter, Payne, Tina, Walsh, John A. and Carr, John P. (2009) The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant - Microbe Interactions, Vol.22 (No.6). pp. 642-654. doi:10.1094/MPMI-22-6-0642

Li, Shou-Li, Ferrari, Matthew J., Bjørnstad, Ottar N., Runge, Michael C., Fonnesbeck, Christopher J., Tildesley, Michael J., Pannell, David and Shea, Katriona (2019) Concurrent assessment of epidemiological and operational uncertainties for optimal outbreak control : Ebola as a case study. Proceedings of the Royal Society B: Biological Sciences, 286 (1905). 20190774. doi:10.1098/rspb.2019.0774

Liu, Jintao, Prindle, Arthur, Humphries, Jacqueline, Gabalda-Sagarra, Marçal, Asally, Munehiro, Lee, Dong-yeon D., Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Metabolic co-dependence gives rise to collective oscillations within biofilms. Nature, 523 (7562). pp. 550-554. doi:10.1038/nature14660

Lo, Angela K. F., Dawson, Christopher W., Lo, Kwok W., Yu, Yanxing and Young, Lawrence S. (2010) Upregulation of Id1 by Epstein-Barr Virus-encoded LMP1 confers resistance to TGFβ-mediated growth inhibition. Molecular Cancer, Vol.9 (No.1). p. 155. doi:10.1186/1476-4598-9-155

Lozano, Jean-Claude, Schatt, Philippe, Botebol, Hugo, Verge, Valerie, Lesuisse, Emmanuel, Blain, Stephane, Carré, Isabelle A. and Bouget, Francois-Yves (2014) Efficient gene targeting and foreign DNA removal by homologous recombination in the picoeukaryote Ostreococcus. Plant Journal, Volume 78 (Number 6). pp. 1073-1083.

Lythgoe, Katrina A., Blanquart, François, Pellis, Lorenzo and Fraser, Christophe (2016) Large variations in HIV-1 viral load explained by shifting-mosaic metapopulation dynamics. PLoS Biology, 14 (10). e1002567. doi:10.1371/journal.pbio.1002567

Lythgoe, Katrina A., Pellis, Lorenzo and Fraser, Christophe (2013) Is HIV short-sighted? Insights from a multistrain nested model. Evolution, Volume 67 (Number 10). pp. 2769-2782. doi:10.1111/evo.12166

Marusic, Carla, Nuttall, James, Buriani, Giampaolo , Lico, Chiara, Lombardi, Raffaele , Baschieri , Selene, Benvenuto, Eugenio and Frigerio, Lorenzo (2007) Expression, intracellular targeting and purification of HIV Nef variants in tobacco cells. BMC Biotechnology, Vol.7 (No.12). doi:10.1186/1472-6750-7-12

Maunder, Helen E., Taylor, Geraldine, Leppard, Keith and Easton, A. J. (Andrew J.) (2015) Intranasal immunisation with recombinant adenovirus vaccines protects against a lethal 2 challenge with pneumonia virus of mice. Vaccine, 33 (48). pp. 6641-6649. doi:10.1016/j.vaccine.2015.10.105

McFadden, Nora, Arias, Armando, Dry, Inga, Bailey, Dalan, Witteveldt, Jeroen, Evans, David J., Goodfellow, Ian and Simmonds, Peter (2013) Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Research, Volume 41 (Number 12). pp. 6316-6331. doi:10.1093/nar/gkt334

Menz, Beatrice, Sester, Martina, Koebernick, Katja, Schmid, Ralf and Burgert, Hans-Gerhard (2008) Structural analysis of the adenovirus type 2 E3/19K protein using mutagenesis and a panel of conformation-sensitive monoclonal antibodies. Molecular Immunology, Vol.46 (No.1). pp. 16-26. doi:10.1016/j.molimm.2008.06.019

Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0

Morobe, John Mwita, Nyiro, Joyce, Brand, Samuel, Kamau, Everlyn, Gicheru, Elijah, Eyase, Fredrick, Otieno, Grieven, Munywoki, Patrick, Agoti, Charles and Nokes, D. James (2018) Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. Wellcome Open Research, 3 . 128. doi:doi:10.12688/wellcomeopenres.14836.1

Morris, S. J. (Susan J.), Farley, Daniel C. and Leppard, Keith (2010) Generation of cell lines to complement Adenovirus vectors using recombination-mediated cassette exchange. BioMed Central Ltd., Vol.10 (No.92). Article No.92. doi:10.1186/1472-6750-10-92

Morris, S. J. (Susan J.) and Leppard, Keith (2009) Adenovirus serotype 5 L4-22K and L4-33K proteins have distinct functions in regulating late gene expression. Journal of Virology, Vol.83 (No.7). pp. 3049-3058. doi:10.1128/JVI.02455-08

Morris, S. J. (Susan J.), Scott, Gillian E. and Leppard, Keith (2010) Adenovirus late phase infection is controlled by a novel L4 promoter. Journal of Virology, Vol.84 (No.14). pp. 7096-7104. doi:10.1128/JVI.00107-10

Munywoki, Patrick K., Koech, Dorothy C., Agoti, Charles N., Bett, Ann, Cane, Patricia A., Medley, Graham F. and Nokes, D. James (2015) Frequent asymptomatic respiratory syncytial virus infections during an epidemic in a rural Kenyan household cohort. Journal of Infectious Diseases, 212 (11). pp. 1711-1718. doi:10.1093/infdis/jiv263

Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Kibirige, N., Kipkoech, J., Cane, Patricia, Medley, Graham and Nokes, D. James (2015) Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiology and Infection, 143 (4). pp. 804-812. doi:10.1017/S0950268814001393

Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Lewa, Clement, Cane, Patricia, Medley, Graham and Nokes, D. James (2014) The source of respiratory syncytial virus infection in infants : a household cohort study in rural Kenya. Journal of Infectious Diseases, Volume 209 (Number 11). pp. 1685-1692. doi:10.1093/infdis/jit828

Mwanga, Mike J., Verani, Jennifer R., Omore, Richard, Tate, Jacqueline E., Parashar, Umesh D., Murunga, Nickson, Gicheru, Elijah, Breiman, Robert F., Nokes, D. James and Agoti, Charles N. (2020) Multiple introductions and predominance of 3 rotavirus group A genotype G3P[8] in Kilifi, coastal Kenya, 4 years after nationwide vaccine introduction. Pathogens, 9 (12). 981. doi:10.3390/pathogens9120981

Métras, Raphaëlle, Cavalerie, Lisa, Dommergues, Laure, Mérot, Philippe, Edmunds, W. John, Keeling, Matthew James, Cêtre-Sossah, Catherine and Cardinale, Eric (2016) The epidemiology of rift valley fever in Mayotte : insights and perspectives from 11 years of data. PLoS Neglected Tropical Diseases, 10 (6). pp. 1-12. e0004783. doi:10.1371/journal.pntd.0004783

Nokes, D. James, Peenze, Ina, Netshifhefhe, Lufuno, Abwao, John, De Beer, Mariet C., Seheri, Mapaseka, Williams, Thomas N., Page, Nicola and Steele, Duncan (2010) Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. The Journal of Infectious Diseases, Vol.202 (Suppl.1). S180-S186. doi:10.1086/653566

Nyiro, Joyce Uchi, Munywoki, Patrick, Kamau, Everlyn, Agoti, Charles, Gichuki, Alex, Etyang, Timothy, Otieno, Grieven and Nokes, D. James (2018) Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. Wellcome Open Research, 3 . 89. doi:10.12688/wellcomeopenres.14662.1

Okal, Michael N, Lindh, Jenny M, Torr, Stephen J., Masinde, Elizabeth, Orindi, Benedict, Lindsay, Steve W and Fillinger, Ulrike (2015) Analysing the oviposition behaviour of malaria mosquitoes : design considerations for improving two-choice egg count experiments. Malaria Journal, Volume 14 (Number 1). Article number 768. doi:10.1186/s12936-015-0768-2

Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O. and Nokes, D. James (2020) Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya. Wellcome Open Research, 5 . 150. doi:10.12688/wellcomeopenres.16037.2

Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F, Cane, Patricia A. and Nokes, D. James (2016) Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. Journal of Virology, 90 (10). pp. 4990-5002. doi:10.1128/JVI.03105-15

Outlaw, Mark C. and Dimmock, N. J. (1991) Insights into neutralization of animal viruses gained from study of influenza virus. Epidemiology and Infection, Vol.106 (No.2). pp. 205-220. doi:10.1017/S0950268800048354

Owen, Thomas J., O'Neil, John D., Dawson, Christopher W., Hu, Chunfang, Chen, Xiaoyi, Yao, Yunhong, Wood, Victoria H. J., Mitchell, Louise E., White, Robert J., Young, Lawrence S. and Arrand, J. R. (2010) Epstein-Barr virus-encoded EBNA1 enhances RNA polymerase III-dependent EBER expression through induction of EBER-associated cellular transcription factors. Molecular Cancer, Vol.9 (No.1). p. 241. doi:10.1186/1476-4598-9-241

Owor, Betty E., Mwanga, Mike J., Njeru, Regina, Mugo, Robert, Ngama, Mwanajuma, Otieno, Grieven P., Nokes, D. James and Agoti, C.N. (2018) Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013. Wellcome Open Research, 3 . 150. doi:doi:10.12688/wellcomeopenres.14908.1

Owuor, D. Collins, Ngoi, Joyce M., Otieno, James R., Otieno, Grieven P., Nyasimi, Festus M., Nyiro, Joyce U., Agoti, Charles N., Chaves, Sandra S. and Nokes, D. James (2020) Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017. Influenza and Other Respiratory Viruses, 14 (3). pp. 320-330. doi:10.1111/irv.12717

Palser, Anne L., Grayson, Nicholas E., White, Robert E., Corton, Craig, Correia, Samantha, Ba abdullah, Mohammed M., Watson, Simon J., Cotten, Matthew, Arrand, John R., Murray, Paul G., Allday, Martin J., Rickinson, Alan B., Young, Lawrence S., Farrell, Paul J. and Kellam, Paul (2015) Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection. Journal of Virology, Volume 89 (Number 10). pp. 5222-5237. doi:10.1128/JVI.03614-14

Pan-Ngum, Wirichada, Kinyanjui, Timothy M., Kiti, Moses C., Taylor, Sylvia, Toussaint, Jean-François, Saralamba, Sompob, Van Effelterre, Thierry, Nokes, D. James and White, Lisa J. (2017) Predicting the relative impacts of maternal and neonatal respiratory syncytial virus (RSV) vaccine target product profiles : a consensus modelling approach. Vaccine, 35 (2). pp. 403-409. doi:10.1016/j.vaccine.2016.10.073

Pellis, Lorenzo, Ball, Frank, Bansal, Shweta, Eames, Ken T. D., House, Thomas A., Isham, Valerie and Trapman, Pieter (2015) Eight challenges for network epidemic models. Epidemics, 10 . pp. 58-62. doi:10.1016/j.epidem.2014.07.003

Pink, Joshua, Parker, Benjamin A. and Petrou, Stavros (2016) Cost effectiveness of HPV Vaccination : a systematic review of modelling approaches. PharmacoEconomics, 34 (9). pp. 847-861. doi:10.1007/s40273-016-0407-y

Radhakrishnan, Anjana, Furze, Christopher M., Ahangar, Mohd Syed and Fullam, Elizabeth (2018) A GFP-strategy for efficient recombinant protein overexpression and purification in Mycobacterium smegmatis. RSC Advances , 8 (58). pp. 33087-33095. doi:10.1039/c8ra06237d

Rihtman, Branko, Bowman-Grahl, Sabine, Millard, Andrew, Corrigan, Rebecca M., Clokie, Martha R. J. and Scanlan, David J. (2019) Cyanophage MazG is a pyrophosphohydrolase but unable to hydrolyse magic spot nucleotides. Environmental Microbiology Reports, 11 (3). pp. 448-445. doi:10.1111/1758-2229.12741

Rock, Kat S., Torr, Steve J., Lumbala, Crispin and Keeling, Matthew James (2015) Quantitative evaluation of the strategy to eliminate human African trypanosomiasis in the Democratic Republic of Congo. Parasites & Vectors, 8 (1). 532. doi:10.1186/s13071-015-1131-8

Roemer, Rudolf A., Roemer, Navodya S. and Wallis, A. Katrine (2021) Flexibility and mobility of SARS-CoV-2-related protein structures. Scientific Reports, 11 . 4257 . doi:10.1038/s41598-021-82849-2

Sazinas, Pavelas, Smith, Carrie, Suhaimi, Aqilah, Hobman, Jon L., Dodd, Christine and Millard, Andrew D. (2016) Draft genome sequence of the Bacteriophage vB_Eco_slurp01. Genome Announcements, 4 (6). e01111-16. doi:10.1128/genomeA.01111-16

Scott, P. D. (Paul D.), Meng, Bo, Marriott, Anthony C., Easton, A. J. (Andrew J.) and Dimmock, N. J. (2011) Defective interfering virus protects elderly mice from influenza. Virology Journal, Vol.8 (No.212). doi:10.1186/1743-422X-8-212

Semblat, Jean-Philippe, Ghumra, Ashfaq, Czajkowsky, Daniel M., Wallis, Russell, Mitchell, Daniel A., Raza, Ahmed and Rowe, J. Alexandra (2015) Identification of the minimal binding region of a Plasmodium falciparum IgM binding PfEMP1 domain. Molecular and Biochemical Parasitology, 201 (1). pp. 76-82. doi:10.1016/j.molbiopara.2015.06.001

Sester, Martina, Ruszics, Zsolt , Mackley, Emma and Burgert, Hans-Gerhard (2013) The transmembrane domain of the adenovirus E3/19K protein acts as an ER retention signal and contributes to intracellular sequestration of MHC class I molecules. Journal of Virology, Volume 87 (Number 11). pp. 6101-6117.

Shiri, Tinevimbo, Nunes, Marta C., Adrian, Peter V., Van Niekerk, Nadia, Klugman, Keith P. and Madhi, Shabir A. (2013) Interrelationship of Streptococcus pneumoniae, Haemophilus influenzae and Staphylococcus aureus colonization within and between pneumococcal-vaccine naïve mother-child dyads. BMC Infectious Diseases, 13 . 483.

Smith, Claire, Scott, Paul, O’Callaghan, Christopher, Easton, A. J. (Andrew J.) and Dimmock, N. J. (2016) A defective interfering influenza RNA inhibits infectious influenza virus replication in human respiratory tract cells : a potential new human antiviral. Viruses, 8 (8). 237. doi:10.3390/v8080237

Stock, Emily, Marriott, Anthony C. and Easton, A. J. (Andrew J.) (2014) The host-range tdCE phenotype of Chandipura virus is determined by mutations in the polymerase gene. Journal of General Virology, Volume 95 (Number 1). pp. 38-43. doi:10.1099/vir.0.059204-0

Syed, Farhatullah and McCrae, Malcolm A. (2009) Interactions in vivo between the Vif protein of HIV-1 and the precursor (Pr55GAG) of the virion nucleocapsid proteins. Archives of Virology, Vol.154 (No.11). pp. 1797-1805. doi:10.1007/s00705-009-0520-8

Szomolay, Barbara, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K., Burrows, Scott R., Roederer, Mario, Price, David A., Wooldridge, Linda and Berg, Hugo van den (2016) Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology, 94 . pp. 573-582. doi:10.1038/icb.2016.12

Thanki, Anisha Mahendra, Taylor-Joyce, Grace, Dowah, Ahmed, Nale, Janet Yakubu, Malik, Danish and Clokie, Martha Rebecca Jane (2018) Unravelling the links between phage adsorption and successful infection in clostridium difficile. Viruses , 10 (8). 411. doi:10.3390/v10080411

Tuplin, Andrew, Evans, David J., Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. doi:10.1093/nar/gkr237

Tuplin, Andrew, Struthers, Madeleine, Cook, Jonathan P., Bentley, Kirsten and Evans, David J. (2015) Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail. Nucleic Acids Research, 43 (5). pp. 2914-2926. doi:10.1093/nar/gkv142

Valentine, Robert, Dawson, Christopher W., Hu, Chunfang, Shah, Khilan M., Owen, Thomas J., Date, Kathryn L., Maia, Sonia P., Shao, Jianyong, Arrand, J. R. (John R.), Young, Lawrence S. and O'Neil, John D. (2010) Epstein-Barr virus-encoded EBNA1 inhibits the canonical NF-κB pathway in carcinoma cells by inhibiting IKK phosphorylation. Molecular Cancer, Vol.9 (No.1). p. 1. doi:10.1186/1476-4598-9-1

Wise, Helen M., Barbezange, Cyril, Jagger, Brett W., Dalton, Rosa Maria, Gog, Julia R., Curran, Martin D., Taubenberger, Jeffery, Anderson, Emma C. and Digard, Paul (2011) Overlapping signals for translational regulation and packaging of influenza A virus segment 2. Nucleic Acids Research, Vol.39 (No.17). pp. 7775-7790. doi:10.1371/journal.pone.0023630

Witteveldt, Jeroen, Blundell, Richard, Maarleveld, Joris J., McFadden, Nora, Evans, David J. and Simmonds, Peter (2013) The influence of viral RNA secondary structure on interactions with innate host cell defences. Nucleic Acids Research, Volume 42 (Number 5). pp. 3314-3329. doi:10.1093/nar/gkt1291

Wright, Jordan and Leppard, Keith (2013) The human adenovirus 5 L4 promoter is activated by cellular stress response protein p53. Journal of Virology, Volume 87 (Number 21). pp. 11617-11625. doi:10.1128/JVI.01924-13

Wright, Jordan L., Atwan, Zeenah, Morris, S. J. (Susan J.) and Leppard, Keith (2015) The human adenovirus type 5 L4 promoter is negatively regulated by TFII-I and by L4-33K. Journal of Virology, Volume 89 (Number 14). pp. 1-36. doi:10.1128/JVI.00683-15

Yan, Chang, Luo, Zhuo, Li, Wen, Li, Xue, Dallmann, Robert, Kurihara, Hiroshi, Li, Yi-Fang and He, Rong-Rong (2020) Disturbed Yin-Yang balance : stress increases the susceptibility to herpes simplex virus type 1 primary and recurrent infections. Acta Pharmaceutica Sinica B, 10 (3). pp. 383-398. doi:10.1016/j.apsb.2019.06.005

Zhao, Lin, Chen, Hongyou, Didelot, Xavier, Li, Zhenpeng, Li, Yinghui, Chen, Meiling, Du, Yu, Zhao, Hongqun, Liu, Jie, Hu, Qinghua, Kan, Biao, Chen, Min and Pang, Bo (2019) Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12. Microbial Genomics, 6 (12). doi:10.1099/mgen.0.000287

van Helden, Mary J. G., Kooten, Peter J. S. van, Bekker, Cornelis P. J., Gröne, Andrea, Topham, David J., Easton, A. J. (Andrew J.), Boog, Claire J. P., Busch, Dirk H., Zaiss, Dietmar M. W. and Sijts, Alice J. A. M. (2012) Pre-existing virus-specific CD8+ T-cells provide protection against pneumovirus-induced disease in mice. Vaccine, Vol.30 (No.45). pp. 6382-6388. doi:10.1016/j.vaccine.2012.08.027

Report

Gravel, Genevieve (2012) The use of a pediatric prophylactic vaccine for respiratory syncytial virus in Kenya. KEMRI-Wellcome Trust Research Programme.

Thesis or Dissertation

Aller, Sean (2018) Computational exploration of antiviral strategies against alphaviruses and flaviviruses: a metabolic modelling study. PhD thesis, University of Warwick.

Asare-Bediako, Elvis (2011) Brassicaceae : Turnip yellows virus interactions. PhD thesis, University of Warwick.

Atwan, Zeenah (2016) Promyelocytic leukaemia protein isoform II and mild heat stress compromise human adenovirus type 5 gene expression. PhD thesis, University of Warwick.

Barrett, A. D. T. (1984) Studies on defective interfering Semliki Forest virus. PhD thesis, University of Warwick.

Bramham, Lawrence (2019) The genetic control of resistance to turnip mosaic virus (TuMV) and turnip yellows virus (TuYV) in brassica. PhD thesis, University of Warwick.

Chan, Jacqueline (2010) Bacteriophages of marine Roseobacter. PhD thesis, University of Warwick.

Cook, Richard Frank (1980) Infection of chicken erythrocytes with influenza and other viruses. PhD thesis, University of Warwick.

Dix, Ian (1994) The expression and function of the adenovirus type 5 E4 region. PhD thesis, University of Warwick.

Edwards., Matthew J. (1999) Interactions of monoclonal antibodies with an influenza A virus. PhD thesis, University of Warwick.

Fannon, Jessica May (2018) Deformed wing virus of honey bees – transmission, diversity and impact on honey bee development. PhD thesis, University of Warwick.

Fox, Adrian Richard (2019) The application of diagnostics in plant health virology. PhD thesis, University of Warwick.

Heath, Richard Rhead (1996) The role of the cell-mediated immune response to rotavirus infection. PhD thesis, University of Warwick.

Heine, Christopher (1982) Retroviruses and insect cells. PhD thesis, University of Warwick.

Hornsey, Crystal A. (2012) The function of extensive structured RNA in the evasion of host anti-virus responses. PhD thesis, University of Warwick.

Hunt, Nicholas (1989) Molecular analysis of the Friend virus complex. PhD thesis, University of Warwick and Heinrich-Pette-Institut, Hamburg.

Kapoor, Sanjay (1995) Molecular determinants of rotavirus virulence. PhD thesis, University of Warwick.

Killen, Helen (1983) Biochemical and serological characterisation of a calf rotavirus. PhD thesis, University of Warwick.

Koliais, Stefanos I. (1973) Studies on the replication of rhinovirus RNA. PhD thesis, University of Warwick.

Ling, Roger (1988) Polypeptides of murine and avian pneumoviruses. PhD thesis, University of Warwick.

Logan, Kelvin B. (1979) Studies on the replication of Semliki Forest virus and the establishment of persistence in cultured mosquito cells. PhD thesis, University of Warwick.

Longhurst, Sharon (1996) Genetic variability of measles virus during propagation in cultured cells. PhD thesis, University of Warwick.

Lowry, Kym (2011) The molecular determinants and consequences of recombination in the evolution of human enteroviruses. PhD thesis, University of Warwick.

Major, Marian (1990) Characterization of human astrovirus type 1. PhD thesis, University of Warwick.

Martin, Brian Anthony Bernard (1973) Replication of Semliki Forest virus RNA in infected chick cells. PhD thesis, University of Warwick.

Martin, Patricia E. M. (1991) Control of protein synthesis by the reovirus S4 gene. PhD thesis, University of Warwick.

Martin, Stuart (2010) The potential of a novel Adenovirus vector for vaccination. PhD thesis, University of Warwick.

Mason, S. (1992) Studies on the cell-binding properties of the reovirus [sigma]1 protein. PhD thesis, University of Warwick.

Meager, Anthony (1972) Studies on the replication and functions of Newcastle disease virus ribonucleic acids. PhD thesis, University of Warwick.

Morser, Michael John (1972) Studies on the formation and function of SFV proteins. PhD thesis, University of Warwick.

Muniraju, Murali Bagalur (2015) Establishment of reverse genetics system for PPR virus to develop recombinant vaccines. PhD thesis, University of Warwick.

Newbert, Max John (2016) The genetic diversity of Turnip yellows virus in oilseed rape (Brassica napus) in Europe, pathogenic determinants, new sources of resistance and host range. PhD thesis, University of Warwick.

Ozkanca, Resit (1993) Survival and physiological status of Escherichia coli in lake water under different nutrient conditions. PhD thesis, University of Warwick.

Puxty, Richard John (2014) The role of light in photosynthetic cyanophages : from physiology to gene expression. PhD thesis, University of Warwick.

Rainsford, Edward (2005) Functional studies on the rotavirus non-structural proteins NSP5 and NSP6. PhD thesis, University of Warwick.

Sadigh, Yashar Mohammadzadeh (2011) A reverse genetics approach to study the pathogenesis of pneumonia virus of mice. PhD thesis, University of Warwick.

Stock, Emily (2014) Characterisation of host-range determinants in Chandipura virus. PhD thesis, University of Warwick.

Terry, Helen Elizabeth (2010) The development of recombinant Adenoviral vaccines to target pneumovirus infection. PhD thesis, University of Warwick.

Thompson, Catherine Isabelle (1999) Protein interaction studies on the rotavirus non-structural protein NSP1. PhD thesis, University of Warwick.

Toth, Ian K. (1991) The isolation of novel "Erwinia" phages and their use in the study of bacterial phytopathogenicity. PhD thesis, University of Warwick.

Weynberg, Karen Dawn (2009) Isolation and characterisation of novel viruses infecting marine phytoplankton. PhD thesis, University of Warwick.

Wilkinson, Gavin William Grahame (1987) Regulation of human cytomegalovirus strain AD169 gene expression. PhD thesis, University of Warwick.

Williams, Richard Dafydd (1993) Construction and analysis of adenovirus/HIV-1 rev recombinants. PhD thesis, University of Warwick.

Zhang, Fan, (Researcher in life sciences) (2012) The role of NSP1 in rotavirus pathogenesis. PhD thesis, University of Warwick.