Journal Article

Ball, Lauren E., Riley, Liam J., Hadasha, Waled, Pfukwa, Rueben, Smith, Corinne J., Dafforn, Timothy R. and Klumperman, Bert (2021) Influence of DIBMA polymer length on lipid nanodisc formation and membrane protein extraction. Biomacromolecules, 22 (2). pp. 763-772. doi:10.1021/acs.biomac.0c01538

Cama, J., Leszczynski, R., Tang, P. K., Khalid, A., Lok, V., Dowson, Christopher G. and Ebata, A. (2021) To push or to pull? In a post-COVID world, supporting and incentivizing antimicrobial drug development must become a governmental priority. ACS Infectious Diseases . doi:10.1021/acsinfecdis.0c00681 (In Press)

Cavallaro, Massimo, Walsh, Mark D., Jones, Matt, Teahan, James, Tiberi, Simone, Finkenstädt, Bärbel and Hebenstreit, Daniel (2021) 3’-5’ crosstalk contributes to transcriptional bursting. Genome Biology . (In Press)

Chhun, Audam, Sousoni, Despoina, Aguilo-Ferretjans, Maria del Mar, Song, Lijiang, Corre, Christophe and Christie-Oleza, Joseph A. (2021) Phytoplankton trigger the production of cryptic metabolites in the marine actinobacterium Salinispora tropica. Microbial Biotechnology, 14 (1). pp. 291-306. doi:10.1111/1751-7915.13722

Clark, Corinna C. A. and Rooney, Nicola J. (2021) Does benchmarking of rating scales improve ratings of search performance given by specialist search dog handlers? Frontiers In Veterinary Science, 8 . 545398. doi:10.3389/fvets.2021.545398

Collis, Dominic W. P., Yilmaz, Gokhan, Yuan, Yichen, Monaco, Alessandra, Ohbaum, Guy, Shi, Yejiao, O'Malley, Clare, Uzunova, Veselina, Napier, Richard, Bitton, Ronit, Becer, Remzi and Azevedo, Helena S. (2021) Hyaluronan (HA)-inspired glycopolymers as molecular tools for studying HA functions. RSC Chemical Biology . doi:10.1039/D0CB00223B (In Press)

Crump, Ronald E., Huang, Ching-I, Knock, Edward, Spencer, Simon E. F., Brown, Paul E., Mwamba Miaka, Erick, Shampa, Chansy, Keeling, Matthew James and Rock, Kat S. (2021) Quantifying epidemiological drivers of gambiense human African Trypanosomiasis across the Democratic Republic of Congo. PLoS Computational Biology, 17 (1). e1008532. doi:10.1371/journal.pcbi.1008532

Dale, Nicholas (2021) Biological insights from the direct measurement of purine release. Biochemical Pharmacology . 114416. doi:10.1016/j.bcp.2021.114416 (In Press)

Dale, Nicholas (2021) CO2 sensing by Connexin26 and its role in the control of breathing. Interface Focus . doi:10.1098/rsfs.2020.0029 (In Press)

Deganutti, Giuseppe, Barkan, Kerry, Preti, Barbara, Leuenberger, Michele, Wall, Mark J., Frenguelli, Bruno G., Lochner, Martin, Ladds, Graham and Reynolds, Christopher A. (2021) Deciphering the agonist binding mechanism to the adenosine A1 receptor. ACS Pharmacology & Translational Science, 4 (1). pp. 314-326. doi:10.1021/acsptsci.0c00195

Delattre, Hadrien, Sasidharan, Kalesh and Soyer, Orkun S. (2021) Inhibiting the reproduction of SARS-CoV-2 through perturbations in human lung cell metabolic network. Life Science Alliance, 4 (1). e202000869. doi:10.26508/lsa.202000869

Didelot, Xavier, Kendall, Michelle, Xu, Yuanwei, White, Peter J. and McCarthy, Noel D. (2021) Genomic epidemiology analysis of infectious disease outbreaks using transPhylo. Current Protocols, 1 (2). e60. doi:10.1002/cpz1.60

Furze, Christopher M., Delso, Ignacio, Casal, Enriqueta, Guy, Collette S., Seddon, Chloe, Brown, Chelsea M., Parker, Hadyn L., Radhakrishnan, Anjana, Pacheco-Gomez, Raul, Stansfeld, Phillip J., Angulo, Jesus, Cameron, Alexander D. and Fullam, Elizabeth (2021) Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter. Journal of Biological Chemistry . 100307. doi:10.1016/j.jbc.2021.100307 (In Press)

(2021) Cyanorak v2.1 : a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. Nucleic Acids Research, 49 (D1). D667-D676. doi:10.1093/nar/gkaa958

Gonçalves, Raquel, de Souza, C. F., Rotani, R., Pereira, A., Farnes, K., Gorsich, Erin E., Silva, R., Brazil, R. P., Hamilton, J. G. C., Courtenay, Orin and UNSPECIFIED (2021) Community deployment of a synthetic pheromone of the sand fly Lutzomyia longipalpis co-located with insecticide reduces vector abundance in treated and neighbouring untreated houses : implications for control of Leishmania infantum. PLoS Neglected Tropical Diseases, 15 (2). e0009080. doi:10.1371/journal.pntd.0009080

Hammond, J., Adams, I., Fowkes, A., McGreig, S., Botermans, M., van Oorspronk, J., Westenberg, M., Verbeek, M., Dullemans, A., Stijger, C., Blouin, A., Massart, S., de Jonghe, K., Heyneman, M., Walsh, John A. and Fox, A. (2021) Sequence analysis of 43-year old samples of Plantago lanceolata show that Plantain virus X is synonymous with Actinidia virus X and is widely distributed. Plant Pathology, 70 (2). pp. 249-258. doi:10.1111/ppa.13310 (In Press)

Harrington, Niamh, Sweeney, Esther, Alav, Ilyas, Allen, Freya, Moat, John and Harrison, Freya (2021) Antibiotic efficacy testing in an ex vivo model of Pseudomonas aeruginosa and Staphylococcus aureus biofilms in the Cystic Fibrosis lung. Journal of Visualized Experiments (167). e62187. doi:10.3791/62187

Hilton, Sally, Picot, Emma, Schreiter, Susanne, Bass, David, Norman, Keith, Oliver, Anna E., Moore, Jonathan D., Mauchline, Tim H., Mills, Peter R., Teakle, Graham R., Clark, Ian. M., Hirsch, Penny. R., van der Gast, Christopher J. and Bending, G. D. (2021) Identification of microbial signatures linked to oilseed rape yield decline at the landscape scale. Microbiome, 9 . 19. doi:10.1186/s40168-020-00972-0

Jacomin, Anne-Claire, Gohel, Raksha, Hussain, Zunoon, Varga, Agnes, Maruzs, Tamas, Eddison, Mark, Sica, Margaux, Jain, Ashish, Moffat, Kevin G., Johansen, Terje, Jenny, Andreas, Juhasz, Gabor and Nezis, Ioannis P. (2021) Degradation of arouser by endosomal microautophagy is essential for adaptation to starvation in Drosophila. Life Science Alliance, 4 (2). e202000965. doi:10.26508/lsa.202000965

Keeling, Matt J., Hill, Edward M., Gorsich, Erin E., Penman, Bridget S., Guyver-Fletcher, Glen, Holmes, Alexander, Leng, Trystan, McKimm, Hector, Tamborrino, Massimiliano, Dyson, Louise and Tildesley, Michael J. (2021) Predictions of COVID-19 dynamics in the UK : short-term forecasting and analysis of potential exit strategies. PLoS Computational Biology, 17 (1). e1008619. doi:10.1371/journal.pcbi.1008619

(2021) Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy . doi:10.1080/15548627.2020.1797280 (In Press)

Komarzynski, Sandra, Wreglesworth, Nicholas I., Griffiths, Dawn, Pecchia, Leandro, Subbe, Christian P., Hughes, Stephen F., Davies, Elin H. and Innominato, Pasquale F. (2021) Embracing change : learnings from implementing multidimensional digital remote monitoring in oncology patients at a district general hospital during the COVID-19 pandemic. JCO Clinical Cancer Informatics (5). pp. 216-220. doi:10.1200/CCI.20.00136 (In Press)

Kombe, Ivy K., Agoti, Charles N., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James and Medley, Graham (2021) Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission. Scientific Reports, 11 . 1463. doi:10.1038/s41598-021-81078-x

Lassalle, Florent, Dastgheib, Seyed M. M., Zhao, Fang-Jie, Zhang, Jun, Verbarg, Susanne, Frühling, Anja, Brinkmann, Henner, Osborne, Thomas H., Sikorski, Johannes, Balloux, Francois, Didelot, Xavier, Santini, Joanne M. and Petersen, Jörn (2021) Phylogenomics reveals the basis of adaptation of Pseudorhizobium species to extreme environments and supports a taxonomic revision of the genus. Systematic and Applied Microbiology, 44 (1). 126165. doi:10.1016/j.syapm.2020.126165

Mateen, Bilal A., Wilde, Harrison, Dennis, John M, Duncan, Andrew, Thomas, Nick, McGovern, Andrew, Denaxas, Spiros, Keeling, Matthew James and Vollmer, Sebastian (2021) Hospital bed capacity and usage across secondary healthcare providers in England during the first wave of the COVID-19 pandemic : a descriptive analysis. BMJ Open, 11 (1). e042945. doi:10.1136/bmjopen-2020-042945

Mburu, C. N., Ojal, J., Chebet, R., Akech, D., Karia, B., Tuju, J., Sigilai, A., Abbas, K., Jit, M., Funk, S., Smits, G., van Gageldonk, P. G. M., van der Klis , F. R. M., Tabu, C., Nokes, D. James, LSHTM CMMID COVID19 Working Group, , Scott, J. A. G., Flasche, S. and Adetifa, I. M. O. (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC Medicine, 19 . 35. doi:10.1186/s12916-021-01906-9

McKenna, Joseph F., Gumber, Hardeep K., Turpin, Zachary M., Jalovec, Alexis M., Kartick, Andre C., Graumann, Katja and Bass, Hank W. (2021) Maize (Zea mays L.) nucleoskeletal proteins regulate nuclear envelope remodeling and function in stomatal complex development and pollen viability. Frontiers in Plant Science . doi:10.3389/fpls.2021.645218 (In Press)

Mitchell, Jack, Mukhtar, Nur K. and Bassel, George (2021) Low temperature stimulates spatial molecular reprogramming of the Arabidopsis seed germination programme. Seed Science Research, 30 (1). pp. 2-12. doi:10.1017/S0960258519000266

Moore, Simon J., Lai, Hung-En, Chee, Soo-Mei, Toh, Ming, Coode, Seth, Chengan, Kameshwari, Capel, Patrick, Corre, Christophe, de los Santos, Emmanuel L. C. and Freemont, Paul S. (2021) A streptomyces venezuelae cell-free toolkit for synthetic biology. ACS Synthetic Biology . doi:10.1021/acssynbio.0c00581 (In Press)

Mushinski, Ryan , Payne, Zachary C., Raff, Jonathan D., Craig, Matthew E., Pusede, Sally E, Rusch, Douglas B., White, Jeffrey R. and Phillips, Richard P. (2021) Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests. Global Change Biology, 27 (5). pp. 1068-1082. doi:10.1111/gcb.15439

Möhlmann, Tim W. R., Keeling, Matthew James, Wennergren, Uno, Favia, Guido, Santman-Berends, Inge, Takken, Willem, Koenraadt, Constantianus J. M. and Brand, Samuel (2021) Biting midge dynamics and bluetongue transmission : a multiscale model linking catch data with climate and disease outbreaks. Scientific Reports, 11 (1). 1892. doi:10.1038/s41598-021-81096-9

Nijjar, Sarbjit, Maddison, Daniel, Meigh, Louise, Wolf, Elizabeth, Rodgers, Thomas, Cann, Martin J. and Dale, Nicholas (2021) Opposing modulation of Cx26 gap junctions and hemichannels by CO 2. The Journal of Physiology, 599 (1). pp. 103-118. doi:10.1113/JP280747

Olateju, Oladiran, Morè, Lorenzo, Arthur, J. Simon C. and Frenguelli, Bruno G. (2021) MSK1 negatively regulates hippocampal neurogenesis. Neuroscience, 452 . pp. 228-234. doi:10.1016/j.neuroscience.2020.11.017

Olateju, Oladiran, Morè, Lorenzo, Arthur, J. Simon C. and Frenguelli, Bruno G. (2021) Mitogen and stress-activated protein kinase 1 negatively regulates hippocampal neurogenesis. Neuroscience, 452 . pp. 228-234. doi:10.1016/j.neuroscience.2020.11.017

Orlando, Ludovic, Allaby, Robin G., Skoglund, Pontus, Der Sarkissian, Clio, Stockhammer, Philipp W., Ávila-Arcos, María C., Fu, Qiaomei, Krause, Johannes, Willerslev, Eske, Stone, Anne C. and Warinner, Christina (2021) Ancient DNA analysis. Nature Reviews Methods Primers, 1 (1). 14. doi:10.1038/s43586-020-00011-0

Pařízková, Barbora, Žukauskaitė, Asta, Vain, Thomas, Grones, Peter, Raggi, Sara, Kubeš, Martin F., Kieffer, Martin, Doyle, Siamsa M., Strnad, Miroslav, Kepinski, Stefan, Napier, Richard, Doležal, Karel, Robert, Stéphanie and Novák, Ondřej (2021) New fluorescent auxin probes visualize tissue-specific and subcellular distributions of auxin in Arabidopsis. New Phytologist . doi:10.1111/nph.17183 (In Press)

Qin, Qi-Long, Wang, Zhi-Bin, Su, Hai-Nan, Chen, Xiu-Lan, Miao, Jie, Wang, Xiu-Juan, Li, Chun-Yang, Zhang, Xi-Ying, Li, Ping-Yi, Wang, Min, Fang, Jiasong, Lidbury, Ian, Zhang, Weipeng, Zhang, Xiao-Hua, Yang, Gui-Peng, Chen, Yin and Zhang, Yu-Zhong (2021) Oxidation of trimethylamine to trimethylamine N-oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage. Science Advances . (In Press)

Rimmer, Michael P., Fishwick, Katherine, Henderson, Ian, Chinn, David, Al Wattar, Bassel H. and Quenby, Siobhan (2021) Quantifying CD138+ cells in the endometrium to assess chronic endometritis in women at risk of recurrent pregnancy loss : a prospective cohort study and rapid review. Journal of Obstetrics and Gynaecology Research . doi:10.1111/jog.14585 (In Press)

Rizan, Chantelle, Bhutta, Mahmood F., Reed, Malcom and Lillywhite, Robert (2021) The carbon footprint of waste streams in a UK hospital. Journal of Cleaner Production, 286 . 125446. doi:10.1016/j.jclepro.2020.125446

Rose, Erica Billig, Nyawanda, Bryan O., Munywoki, Patrick K., Murunga, Nickson, Bigogo, Godfrey M., Otieno, Nancy A., Onyango, Clayton, Chaves, Sandra S., Verani, Jennifer R., Emukule, Gideon O. , Widdowson, Marc‐Alain, Nokes, D. James, Gerber, Susan I. and Langley, Gayle E. (2021) Respiratory syncytial virus seasonality in three epidemiological zones of Kenya. Influenza and Other Respiratory Viruses, 15 (2). pp. 195-201. doi:10.1111/irv.12810

Shanmugam, Muralidharan, Quareshy, Mussa, Cameron, Alexander, Bugg, Timothy D. H. and Chen, Yin (2021) Light‐activated electron transfer and catalytic mechanism of carnitine oxidation by Rieske‐type oxygenase from human microbiota. Angewandte Chemie International Edition, 60 (9). pp. 4529-4534. doi:10.1002/anie.202012381

Shropshire, Holly, Jones, Rebekah A., Aguilo‐Ferretjans, María M., Scanlan, David J. and Chen, Yin (2021) Proteomics insights into the Burkholderia cenocepacia phosphorus stress response. Environmental Microbiology . (In Press)

Simcock, Patrick W., Bublitz, Maike, Cipcigan, Flaviu, Ryadnov, Maxim G., Crain, Jason, Stansfeld, Phillip J. and Sansom, Mark S. P. (2021) Membrane binding of antimicrobial peptides is modulated by lipid charge modification. Journal of Chemical Theory and Computation, 17 (2). pp. 1218-1228. doi:10.1021/acs.jctc.0c01025

Smith, Alastair F., Silvano, Eleonora, Päuker, Orsola, Guillonneau , Richard, Quareshy, Mussa, Murphy, Andrew, Mausz, Michaela A., Stirrup, Rachel, Rihtman, Branko, Aguilo Ferretjans, Maria, Brandsma, Joost, Petersen, Jörn, Scanlan, David J. and Chen, Yin (2021) A novel class of sulfur-containing aminolipids widespread in marine roseobacters. ISME Journal . (In Press)

Tridgett, Matthew, Ababi, Maria, Osgerby, Alexander, Ramirez Garcia, Robert and Jaramillo, Alfonso (2021) Engineering bacteria to produce pure phage-like particles for gene delivery. ACS Synthetic Biology, 10 (1). pp. 107-114. doi:10.1021/acssynbio.0c00467

(2021) Global burden of acute lower respiratory infection associated with human metapneumovirus in children under five years for 2018 : a systematic review and modelling study. Lancet Global Health, 9 (1). E33-E43. doi:10.1016/S2214-109X(20)30393-4

Whiteford, Rory, Nurika, Irnia, Schiller, Tara L. and Barker, Guy C. (2021) The white-rot fungus, Phanerochaete chrysosporium, under combinatorial stress produces variable oil profiles following analysis of secondary metabolites. Journal of Applied Microbiology . doi:10.1111/jam.15013 (In Press)

Zhou, Shanshan, Bhukya, Hussain, Malet, Nicolas, Harrison, Peter J. , Rea, Dean, Belousoff, Matthew J., Venugopal, Hariprasad, Sydor, Paulina K., Styles, Kathryn, Song, Lijiang, Cryle, Max J., Alkhalaf, Lona M., Fülöp, Vilmos, Challis, Gregory L. and Corre, Christophe (2021) Molecular basis for control of antibiotic production by a bacterial hormone. Nature . doi:10.1038/s41586-021-03195-x (In Press)

Book Item

Johnson, Connah, Delattre, Hadrien, Hayes, Clarmyra and Soyer, Orkun S. (2021) An evolutionary systems biology view on metabolic system structure and dynamics. In: Crombach, Anton, (ed.) Evolutionary Systems Biology : Advances, Questions, and Opportunities. Springer-Nature. (In Press)

Savage, Jessica, Cook, Sarah and Yeboah, Godwin (2021) Tourist traps : assessing the role of tourism in sustaining life below water. In: Filho, Walter Leal and Anabela Marisa, Azul and Brandli, Luciana and Lange Salvia, Amanda and Wall, Tony, (eds.) Life Below Water. Encyclopedia of the UN Sustainable Development Goals . Cham: Springer. ISBN 9783319710648