Journal Article

Abrams, William R., Madsen, Jens, Gaiha, Gaurav D., Palaniyar, Nades, Dong, Tao, Mitchell, Daniel A. and Clark, Howard W. (2013) Surfactant protein D modulates HIV infection of both T-cells and dendritic cells. PLoS One, Volume 8 (Number 3). Article no. e59047. doi:10.1371/journal.pone.0059047

Achtman, Mark (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. doi:10.1371/journal.pgen.1002255

Adams, Sally, Manfield, Ian, Stockley, Peter and Carré, Isabelle A. (2015) Revised morning loops of the Arabidopsis circadian clock based on analyses of direct regulatory interactions. PLoS One, 10 (12). e0143943. doi:10.1371/journal.pone.0143943

Al-Izzi, Sami C., Rowlands, George, Sens, Pierre and Turner, Matthew S. (2018) Hydro-osmotic instabilities in active membrane tubes. Physical Review Letters, 120 (13). 138102. doi:10.1103/PhysRevLett.120.138102

Al-Lehyani, Ibrahim H., Grime, John M. A., Bano, Matthew, McKelvey, Kim M. (Kim Martin) and Allen, M. P. (2013) Coarse-grained simulation of transmembrane peptides in the gel phase. Journal of Computational Physics, Volume 238 . pp. 97-105. doi:10.1016/j.jcp.2012.12.014

Almasri, Firas, Hewapathirana, Gertrude I, Ghaddar, Fatme, Lee, Nick and Ibrahim, Bashar (2021) Measuring attitudes towards biology major and non-major : effect of students’ gender, group composition, and learning environment. PLoS One, 16 (5). e0251453. doi:10.1371/journal.pone.0251453

Alvarez, Yanina and Smutny, Michael (2022) Emerging role of mechanical forces in cell fate acquisition. Frontiers in Cell and Developmental Biology, 10 . 864522. doi:10.3389/fcell.2022.864522

Amin, Munia, Porter, Steven L. and Soyer, Orkun S. (2013) Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks. PLoS Computational Biology, Volume 9 (Number 3). Article no. e1002949. doi:10.1371/journal.pcbi.1002949

Amin, Nader T., Wallis, A. Katrine, Wells, Stephen A., Rowe, Michelle L., Williamson, Richard A., Howard, Mark J. and Freedman, R. B. (2013) High-resolution NMR studies of structure and dynamics of human ERp27 indicate extensive interdomain flexibility. Biochemical Journal, Volume 450 (Number 2). pp. 321-332. doi:10.1042/BJ20121635

Armond, Jonathan W., Saha, Krishanu, Rana, Anas A., Oates, Chris J., Jaenisch, Rudolf, Nicodemi, Mario and Mukherjee, Sach (2014) A stochastic model dissects cell states in biological transition processes. Scientific Reports, Volume 4 . Article number 3692. doi:10.1038/srep03692

Armond, Jonathan W., Vladimirou, Elina, Erent, Muriel, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Probing microtubule polymerisation state at single kinetochores during metaphase chromosome motion. Journal of Cell Science, Volume 128 (Number 10). pp. 1991-2001. doi:10.1242/jcs.168682

Arnoldt, Hinrich, Timme, Marc and Grosskinsky, Stefan (2012) Frequency-dependent fitness induces multistability in coevolutionary dynamics. Journal of The Royal Society Interface, Vol.9 (No.77). pp. 3387-3396. doi:10.1098/rsif.2012.0464

(2022) Structural basis of lipopolysaccharide maturation by the WaaL O-antigen ligase. Nature, 604 . pp. 371-376. doi:10.1038/s41586-022-04555-x

Baker, Ysobel R., Chen, Jinfeng, Brown, Jason, El-Sagheer, Afaf H., Wiseman, Philip, Johnson, Errin, Goddard, Paul and Brown, Tom (2018) Preparation and characterization of manganese, cobalt and zinc DNA nanoflowers with tuneable morphology, DNA content and size. Nucleic Acids Research, 46 (15). pp. 7495-7505. doi:10.1093/nar/gky630

Baniukiewicz, Piotr, Collier, Sharon and Bretschneider, Till (2018) QuimP : analyzing transmembrane signalling in highly deformable cells. Bioinformatics, 34 (15). pp. 2695-2697. bty169. doi:10.1093/bioinformatics/bty169

Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf and Blindauer, Claudia A. (2012) Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, Volume 3 . Article number 142. doi:10.3389/fmicb.2012.00142

Barnett, James P., Dr., Blindauer, Claudia A., Kassaar, Omar, Khazaipoul, Siavash, Martin, Esther M., Sadler, P. J. and Stewart, Alan J. S. (2013) Allosteric modulation of zinc speciation by fatty acids. Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 830 (Number 12). doi:10.1016/j.bbagen.2013.05.028

Baronchelli, Andrea, Chater, Nick, Christiansen, Morten H. and Pastor-Satorras, R. (2013) Evolution in a changing environment. PLoS ONE, Vol.8 (No.1). e52742. doi:10.1371/journal.pone.0052742

Baronchelli, Andrea, Chater, Nick, Pastor-Satorras, R. and Christiansen, Morten H. (2012) The biological origin of linguistic diversity. PLoS One, Vol.7 (No.10). e48029. doi:10.1371/journal.pone.0048029

Berg, Hugo van den , Ladell, Kristin, Miners, Kelly, Laugel, Bruno, Llewellyn-Lacey, Sian, Clement, Mathew, Cole, David K., Gostick, Emma, Wooldridge, L., Sewell, Andrew K., Bridgeman, John S. and Price, D. A. (2013) Cellular-level versus receptor-level response threshold hierarchies in T-Cell activation. Frontiers in Immunology, Volume 4 . Article number 200. doi:10.3389/fimmu.2013.00250

Bila, J., Mortensen, C. N., Andresen, M., Vicente, Joana G. and Wulff, E. G. (2013) Xanthomonas campestris pv. campestris race 1 is the main causal agent of black rot of Brassicas in Southern Mozambique. African Journal of Biotechnology, Volume 12 (Number 6). pp. 602-610.

Bingle, Lewis E. H., Constantinidou, Chrystala, Shaw, Robert K., Islam, Md. Shahidul, Patel, Mala, Snyder, Lori A. S., Lee, David J., Penn, C. W., Busby, Stephen J. W. and Pallen, Mark J. (2014) Microarray analysis of the ler regulon in enteropathogenic and enterohaemorrhagic escherichia coli strains. PLoS One, Volume 9 (Number 1). e80160. doi:10.1371/journal.pone.0080160

Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves , Carré, Isabelle A., Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, Piégu, Benoit, Rivals, Eric , Schackwitz, Wendy, Peer, Yves van de and Piganeau, Gwenaël (2014) An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics, Volume 15 . pp. 1-11. Article number 1103. doi:10.1186/1471-2164-15-1103

Bland, C., Hartmann, E. M., Christie-Oleza, Joseph Alexander, Fernandez, Bernard and Armengaud, J. (2014) N-Terminal-oriented proteogenomics of the marine bacterium Roseobacter Denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography. Molecular & Cellular Proteomics, Volume 13 (Number 5). pp. 1369-1381. doi:10.1074/mcp.O113.032854

Bridges, Rebecca G., Sohn, Sook-Young, Wright, Jordan L., Leppard, Keith and Hearing, Patrick (2016) The adenovirus E4-ORF3 protein stimulates SUMOylation of general transcription factor TFII-I to direct proteasomal degradation. mBio, 7 (1). e02184-15. doi:10.1128/mBio.02184-15

Brooks, Rhiannon and Dixon, Ann M. (2020) Revealing the mechanism of protein-lipid interactions for a putative membrane curvature sensor in plant endoplasmic reticulum. Biochimica et biophysica acta. Biomembranes, 1862 (3). 183160. doi:10.1016/j.bbamem.2019.183160

(2014) Uterine selection of human embryos at implantation. Scientific Reports, 4 . 3894. doi:10.1038/srep03894

Brotherton, Deborah H., Savva, Christos G., Ragan, Timothy J., Dale, Nicholas and Cameron, Alexander D. (2022) Conformational changes and CO2-induced channel gating in connexin26. Structure, 30 (5). 697-706.e4. doi:10.1016/j.str.2022.02.010

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248

Brumley, Douglas R., Polin, Marco, Pedley, T. J. and Goldstein, Raymond E. (2015) Metachronal waves in the flagellar beating of Volvox and their hydrodynamic origin. Interface, Number 12 . pp. 1-12. Article number 20141358. doi:10.1098/rsif.2014.1358

Bräutigam, Katharina, Vining, Kelly J., Lafon-Placette, Clément, Fossdal, Carl G., Mirouze, Marie, Jose, Gutiérrez-Marcos, Fluch, Silvia, Fraga, Mario Fernández, Guevara, M. Ángeles, Abarca, Dolores, Johnsen, Øystein, Maury, Stéphane, Strauss, Steven H., Campbell, Malcolm M., Rohde, Antje, Díaz-Sala, Carmen and Cervera, María-Teresa (2013) Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, Volume 3 (Number 2). pp. 399-415. doi:10.1002/ece3.461

Bugg, Tim (2012) Biosynthesis : imaging cell-wall biosynthesis live. Nature Chemistry, Vol.5 (No.1). pp. 10-12. doi:10.1038/nchem.1538

Burgess, Selena G., Mukherjee, Manjeet, Sabir, Sarah, Joseph, Nimesh, Gutiérrez-Caballero, Christina, Richards, Mark W., Huguenin‐Dezot, Nicolas, Chin, Jason W., Kennedy, Eileen J., Pfuhl, Mark, Royle, Stephen J., Gergely, Fanni and Bayliss, Richard (2018) Mitotic spindle association of TACC3 requires Aurora‐A‐dependent stabilization of a cryptic α‐helix. The EMBO Journal, 37 (8). e97902. doi:10.15252/embj.201797902

Busi, R. (Roberto), Neve, Paul and Powles, Stephen B. (2013) Evolved polygenic herbicide resistance in Lolium rigidum by low-dose herbicide selection within standing genetic variation. Evolutionary Applications, Volume 6 (Number 2). pp. 231-242. doi:10.1111/j.1752-4571.2012.00282.x

Busi, Roberto, Vila-Aiub, Martin M., Beckie, Hugh John, Gaines, Todd A., Goggin, Danica E., Kaundun, Shiv S., Lacoste, Myrtille, Neve, Paul, Nissen, Scott Jay, Norsworthy, Jason K., Renton, M., Shaner, Dale L., Tranel, Patrick J., Wright, Terry R., Yu, Qin and Powles, Stephen B. (2013) Herbicide-resistant weeds : from research and knowledge to future needs. Evolutionary Applications, Volume 6 (Number 8). pp. 1218-1221. doi:10.1111/eva.12098

Carbonero, Franck, Oakley, Brian B. and Purdy, Kevin J. (2014) Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One, Volume 9 (Number 1). Article number e85105. doi:10.1371/journal.pone.0085105

Carpenter, Byron and Tate, Christopher G. (2017) Active state structures of G protein-coupled receptors highlight the similarities and differences in the G protein and arrestin coupling interfaces. Current Opinion in Structural Biology, 45 . pp. 124-132. doi:10.1016/j.sbi.2017.04.010

Carrera, Javier and Jaramillo, Alfonso (2013) Automated design of bacterial genome sequences. BMC Systems Biology, Volume 7 (Number 1). Article number 108. doi:10.1186/1752-0509-7-108

Carslake, David, Grant, Wyn, Green, Laura E., Cave, Jonathan A. K., Greaves, Justin, Keeling, Matthew James, McEldowney, John F., Weldegebriel, Habtu Tadesse and Medley, Graham (2011) Endemic cattle diseases : comparative epidemiology and governance. Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol.366 (No.1573). pp. 1975-1986. doi:10.1098/rstb.2010.0396

Carslake, David, Townley, Stuart and Hodgson, David J. (2009) Patterns and rules for sensitivity and elasticity in population projection matrices. Ecology, Vol.90 (No.11). pp. 3258-3267. doi:10.1890/08-1188.1

Carter, Anthony D., Bonyadi, Roxanna and Gifford, Miriam L. (2013) The use of fluorescence-activated cell sorting in studying plant development and environmental responses. The International Journal of Developmental Biology, Volume 57 . pp. 545-552. doi:10.1387/ijdb.130195mg

Castro, Thiago L. P., Seyffert, Nubia, Ramos, Rommel T. J., Barbosa, Silvanira, Carvalho, Rodrigo D. O., Pinto, Anne Cybelle, Carneiro, Adriana Ribeiro, Silva, Wanderson Marques, Pacheco, Luis G. C., Downson, Christopher G., Schneider, Maria P. C., Miyoshi, Anderson, Azevedo, V. (Vasco) and Silva, Artur (2013) Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method. Microbial Biotechnology, Volume 6 (Number 2). pp. 168-177. doi:10.1111/1751-7915.12020

Caudron, Quentin, Donnelly, Simon R., Brand, Samuel and Timofeeva, Yulia (2012) Computational convergence of the path integral for real dendritic morphologies. The Journal of Mathematical Neuroscience, Volume 2 (Number 1). doi:10.1186/2190-8567-2-11

Chan, Jacqueline, Halachev, Mihail R., Loman, Nicholas J., Constantinidou, Chrystala and Pallen, Mark J. (2012) Defining bacterial species in the genomic era : insights from the genus Acinetobacter. BMC Microbiology, 12 (1). 302. doi:10.1186/1471-2180-12-302

Chen, Li I., Sooranna, Suren R., Lei, Kaiyu, Kandola, Mandeep, Bennett, Phillip, Liang, Zhiqing, Grammatopoulos, Dimitris and Johnson, Mark R. (2012) Cyclic AMP increases COX-2 expression via mitogen-activated kinase in human myometrial cells. Journal of Cellular and Molecular Medicine, Volume 16 (Number 7). pp. 1447-1460. doi:10.1111/j.1582-4934.2011.01413.x

Chen, Yixiang, Wright, Jordan L., Meng, Xueqiong and Leppard, Keith (2015) Promyelocytic leukemia protein isoform II promotes transcription factor recruitment to activate interferon β and interferon-responsive gene expression. Molecular and Cellular Biology, Volume 35 (Number 10). pp. 1660-1672. doi:10.1128/MCB.01478-14

Chew, Ting Gang, Huang, Junqi, Palani, Saravanan, Sommese, Ruth, Kamnev, Anton, Hatano, Tomoyuki, Gu, Ying, Oliferenko, Snezhana, Sivaramakrishnan, Sivaraj and Balasubramanian, Mohan K. (2017) Actin turnover maintains actin filament homeostasis during cytokinetic ring contraction. The Journal of Cell Biology, 216 (9). pp. 2657-2667. doi:10.1083/jcb.201701104

Christie-Oleza, Joseph Alexander and Armengaud, Jean (2010) In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry : the Ruegeria pomeroyi DSS-3 case-study. Marine Drugs, Volume 8 (Number 8). pp. 2223-2239. doi:10.3390/md8082223

The Genographic Consortium (Including: Clarke, Andrew C., Prost, Stefan, Stanton, Jo-Ann L., White, W Timothy J., Kaplan, Matthew E. and Matisoo-Smith, Lisa). (2014) From cheek swabs to consensus sequences : an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. BMC Genomics, Volume 15 (Number 1). Article number 68. doi:10.1186/1471-2164-15-68

Clarke, Nicholas I. and Royle, Stephen J. (2018) FerriTag is a new genetically-encoded inducible tag for correlative light-electron microscopy. Nature Communications, 9 (1). 2604. doi:10.1038/s41467-018-04993-0

Click, Arielle, Savaliya, Chandni H, Kienle, Simone, Herrmann, Matthias and Pires-da Silva, André Francisco (2009) Natural variation of outcrossing in the hermaphroditic nematode Pristionchus pacificus. BMC Evolutionary Biology, Volume 9 (Number 1). Article no.75. doi:10.1186/1471-2148-9-75

Collier, Sharon, Paschke, Peggy, Kay, Robert R. and Bretschneider, Till (2017) Image based modeling of bleb site selection. Scientific Reports, 7 . 6692. doi:10.1038/s41598-017-06875-9

Constantinidou, Chrystala, Sergeant, Martin J., Cogan, Tristan, Penn, Charles W. and Pallen, Mark J. (2012) High-throughput sequencing of 16S rRNA gene amplicons : effects of extraction procedure, primer length and annealing temperature. PLoS One, Volume 7 (Number 5). Article number e38094. doi:10.1371/journal.pone.0038094

Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Woodcock, Ailidh, Swarup, Ranjan, Galbiati, Massimo, Tonelli, Chiara, Napier, R., Hedden, Peter, Bennett, Malcolm J. and Sadanandom, Ari (2014) Small ubiquitin-like modifier protein SUMO enables plants to control growth independently of the phytohormone gibberellin. Developmental Cell, Volume 28 (Number 1). pp. 102-110. doi:10.1016/j.devcel.2013.12.004

Contino, Matteo, Lushi, Enkeleida, Tuval, Idan, Kantsler, Vasily and Polin, Marco (2015) Microalgae scatter off solid surfaces by hydrodynamic and contact forces. Physical Review Letters, 115 (25). pp. 1-5. 258102. doi:10.1103/PhysRevLett.115.258102

Cook, Jonathan P., de Wolf, Elizabeth and Dale, Nicholas (2019) Cx26 keratitis ichthyosis deafness syndrome mutations trigger alternative splicing of Cx26 to prevent expression and cause toxicity in vitro. Royal Society Open Science , 6 (8). 191128. doi:10.1098/rsos.191128

Cortese, Enrico, Moscatiello, Roberto, Pettiti, Francesca, Carraretto, Luca, Baldan, Barbara, Frigerio, Lorenzo, Vothknecht, Ute C., Szabo, Ildiko, De Stefani, Diego, Brini, Marisa and Navazio, Lorella (2022) Monitoring calcium handling by the plant endoplasmic reticulum with a low‐Ca 2+ ‐affinity targeted aequorin reporter. The Plant Journal, 109 (4). pp. 1014-1027. doi:10.1111/tpj.15610

Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020

Daniels, D. Robert and Turner, Matthew S. (2013) Islands of conformational stability for Filopodia. PLoS One, Volume 8 (Number 3). Article no. e59010. doi:10.1371/journal.pone.0059010

Datta, Samik, Bull, James C., Budge, Giles E. and Keeling, Matthew James (2013) Modelling the spread of American foulbrood in honeybees. Journal of The Royal Society Interface, Volume 10 (Number 88). Article number 20130650. doi:10.1098/rsif.2013.0650

Davies, Lawrence O., Schäfer, Hendrik, Marshall, Samantha, Bramke, Irene, Oliver, Robin G. and Bending, G. D. (2013) Light structures phototroph, bacterial and fungal communities at the soil surface. PLoS One, Volume 8 (Number 7). Article number e69048. doi:10.1371/journal.pone.0069048

Dawson, Peter Michael, Werkman, Marleen, Brooks-Pollock, Ellen and Tildesley, Michael J. (2015) Epidemic predictions in an imperfect world : modelling disease spread with partial data. Proceedings of the Royal Society B: Biological Sciences, Volume 282 (Number 1808). Article number 20150205. doi:10.1098/rspb.2015.0205

Deller, Robert C., Pessin, Jeffrey E., Vatish, Manu, Mitchell, Daniel A. and Gibson, Matthew I. (2016) Enhanced non-vitreous cryopreservation of immortalized and primary cells by ice-growth inhibiting polymers. Biomaterials Science, 4 (7). pp. 1079-1084. doi:10.1039/c6bm00129g

Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. doi:10.1371/journal.pgen.1002191

Dilly, Suzanne J., Beecham, Matthew P., Brown, Steven P., Griffin, John M., Clark, Andrew J., Griffin, Craig D., Marshall, Jacqueline, Napier, R. (Richard), Taylor, Paul C. and Marsh, Andrew (2006) Novel tertiary amine oxide surfaces that resist non-specific protein adsorption. Langmuir, Vol.22 (No.19). pp. 8144-8150. doi:10.1021/la060743j

(2020) Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology, 11 . 567431. doi:10.3389/fmicb.2020.567431

Dow, Claire E., Rodger, Alison, Roper, David I. and Berg, Hugo van den (2013) A model of membrane contraction predicting initiation and completion of bacterial cell division. Integrative Biology (Number 5). pp. 778-795. doi:10.1039/c3ib20273a

Dowler, Elizabeth (2012) Philip Reid Payne, Professor of Nutrition, London School of Hygiene and Tropical Medicine (30 July 1928–9 January 2012). Proceedings of the Nutrition Society, Volume 71 (Number 4). pp. 639-640. doi:10.1017/S0029665112000286

Dowling, Andrea J., Wilkinson, Paul A., Holden, Matthew T. G., Quail, Michael A., Bentley, Stephen D., Reger, Julia, Waterfield, Nicholas R., Titball, Richard W. and ffrench-Constant, Richard H. (2010) Genome-wide analysis reveals loci encoding anti-macrophage factors in the human pathogen burkholderia pseudomallei K96243. PLoS One, Volume 5 (Number 12). Article number e15693. doi:10.1371/journal.pone.0015693

Drechsler, Hauke and McAinsh, Andrew D. (2012) Exotic mitotic mechanisms. Open Biology, Vol.2 . Article number 120140. doi:10.1098/rsob.120140

Du, Cheng-Jin, Hawkins, Phillip T., Stephens, Len R. and Bretschneider, Till (2013) 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics, Volume 14 (Number 1). Article number 296. doi:10.1186/1471-2105-14-296

Dudka, Damian, Noatynska, Anna, Smith, Christopher A., Liaudet, Nicolas, McAinsh, Andrew D. and Meraldi, Patrick (2018) Complete microtubule–kinetochore occupancy favours the segregation of merotelic attachments. Nature Communications, 9 (1). doi:10.1038/s41467-018-04427-x

Duran-Nebreda, Salva, Johnston, Iain G. and Bassel, George (2020) Efficient vasculature investment in tissues can be determined without global information. Journal of The Royal Society Interface, 17 (165). 20200137. doi:10.1098/rsif.2020.0137

Durrieu, Lucia, Kirrmaier, Daniel, Schneidt, Tatjana, Kats, Ilia, Raghavan, Sarada, Hufnagel, Lars, Saunders, Timothy E. and Knop, Michael (2018) Bicoid gradient formation mechanism and dynamics revealed by protein lifetime analysis. Molecular Systems Biology, 14 (9). e8355. doi:10.15252/msb.20188355

Dyson, Louise, Holmes, Alexander, Li, Ang and Kulesa, Paul M. (2018) A chemotactic model of trunk neural crest cell migration. Genesis: The Journal of Genetics and Development, 56 (9). e23239. doi:10.1002/dvg.23239

(2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. doi:10.1007/s10577-013-9347-y

Eichmann, Ruth and Schäfer, P. (Patrick) (2012) The endoplasmic reticulum in plant immunity and cell death. Frontiers in Plant Science, Volume 3 . Article number 200. doi:10.3389/fpls.2012.00200

Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David and Bohlmann, Holger (2013) The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiology and Biochemistry, Volume 70 . pp. 379-386. doi:10.1016/j.plaphy.2013.05.016

Elias, Dafydd M. O., Rowe, Rebecca L., Pereira, M. Glória, Stott, Andrew W., Barnes, Christopher J., Bending, G. D. and McNamara, Niall P. (2017) Functional differences in the microbial processing of recent assimilates under two contrasting perennial bioenergy plantations. Soil Biology and Biochemistry, 114 . pp. 248-262. doi:10.1016/j.soilbio.2017.07.026

Elliott, Charles M., Graser, Carsten, Hobbs, Graham, Kornhuber, R. and Wolf, Maren-Wanda (2016) A variational approach to particles in lipid membranes. Archive for Rational Mechanics and Analysis, 222 (2). pp. 1011-1075. doi:10.1007/s00205-016-1016-9

Elliott, Charles M., Stinner, Björn and Venkataraman, Chandrasekhar (2012) Modelling cell motility and chemotaxis with evolving surface finite elements. Journal of The Royal Society Interface, Volume 9 (Number 76). pp. 3027-3044. doi:10.1098/rsif.2012.0276

(2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. doi:10.4056/sigs.3406845

Eskat, Anja, Deng, Wen, Hofmeister, Antje, Rudolphi, Sven, Emmerth, Stephan, Hellwig, Daniela, Ulbricht, Tobias, Döring, Volker, Bancroft, James M., McAinsh, Andrew D., Cardoso, M. Cristina, Meraldi, Patrick, Hoischen, Christian, Leonhardt, Heinrich and Diekmann, Stephan (2012) Step-wise assembly, maturation and dynamic behavior of the human CENP-P/O/R/Q/U kinetochore sub-complex. PLoS One, Vol.7 (No.9). e44717. doi:10.1371/journal.pone.0044717

Evans, Neil D. (2013) Controlling nonlinear infinite-dimensional systems via the initial state. SIAM Journal on Control and Optimization, 51 (5). pp. 3757-3780. doi:10.1137/110823080

Eyice, Özge, Namura, Motonobu, Chen, Yin, Mead, A. (Andrew), Samavedam, Siva and Schäfer, Hendrik (2015) SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment. The ISME Journal, 9 . pp. 2336-2348. doi:10.1038/ismej.2015.37

Fabre, Laëtitia, Zhang, Jian, Guigon, Ghislaine, Le Hello, Simon, Guibert, Véronique, Accou-Demartin, Marie, de Romans, Saïana, Lim, Catherine, Roux, Chrystelle, Passet, Virginie, Diancourt, Laure, Guibourdenche, Martine, Issenhuth-Jeanjean, Sylvie, Achtman, Mark, Brisse, Sylvain, Sola, Christophe and Weill, François-Xavier (2012) CRISPR typing and subtyping for improved laboratory surveillance of salmonella infections. PLoS One, Volume 7 (Number 5). Article number e36995. doi:10.1371/journal.pone.0036995

Feeney, Mistianne, Frigerio, Lorenzo, Kohalmi, Susanne E., Cui, Yuhai and Menassa, Rima (2013) Reprogramming cells to study vacuolar development. Frontiers in Plant Science, Volume 4 . Article number 493. doi:10.3389/fpls.2013.00493

Feillet, Céline‏, Horst, Gijsbertus Theodorus Johannes van der‏, Lévi, Francis A., Rand, D. A. and Delaunay, Franck (2015) Coupling between the circadian clock and cell cycle oscillators : implication for healthy cells and malignant growth. Frontiers in Neurology, Volume 6 . Article number 96. doi:10.3389/fneur.2015.00096

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Book Item

Valdes-Amaro, Daniel and Bhalerao, Abhir (2009) Unsupervised clustering using diffusion maps for local shape modelling. In: Moreno-Díaz, Roberto and Pichler, Franz, 1936- and Quesada-Arencibia, Alexis, (eds.) Computer Aided Systems Theory : EUROCAST 2009. Lecture Notes in Computer Science, Volume 5717 . Springer Berlin Heidelberg, pp. 342-349. ISBN 9783642047718

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Conference Item

Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten and Nattkemper, Tim W. (2011) TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology pp. 1-5.

Sanassy, Daven, Fellermann, Harold, Krasnogor, Natalio, Konur, Savas, Mierla, Laurentiu M., Gheorghe, Marian, Ladroue, Christophe and Kalvala, Sara (2014) Modelling and stochastic simulation of synthetic biological Boolean gates. In: 2014 IEEE International Conference on High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS), Paris, 20-22 Aug 2014. Published in: High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS) pp. 404-408. ISBN 9781479961221. doi:10.1109/HPCC.2014.68

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Journal Item

Arasaradnam, Ramesh P. and Nwokolo, Chuka U. (2012) Epiphenomenon of telomere lengths : lessons from ulcerative colitis. Gut, Vol.61 (No.10). p. 1516. doi:10.1136/gutjnl-2012-302102

Asally, Munehiro and Prindle, Arthur (2021) Microbial electrophysiology. Bioelectricity, 3 (2). p. 110. doi:10.1089/bioe.2021.0016

Breeze, Emily and Mullineaux, Philip M. (2022) The passage of H2O2 from chloroplasts to their associated nucleus during retrograde signalling : reflections on the role of the nuclear envelope. Plants, 11 (4). 552. doi:10.3390/plants11040552

Liu, Kuo-Kang, Wu, Ren-Guei, Chuang, Yun-Ju, Khoo, Hwa Seng, Huang, Shih-Hao and Tseng, Fan-Gang (2010) Microfluidic systems for biosensing. Sensors, Vol.10 (No.7). pp. 6623-6661. doi:10.3390/s100706623

Nezis, I. P., Vaccaro, Maria I., Devenish, Rodney J. and Juhász, Gábor (2014) Autophagy in development, cell differentiation, and homeodynamics: from molecular mechanisms to diseases and pathophysiology. BioMed Research International, Volume 2014 . pp. 1-2. Article number 349623. doi:10.1155/2014/349623

Submitted Journal Article

(2010) The Scottish Structural Proteomics Facility : targets, methods and outputs. Journal of Structural and Functional Genomics, Vol.11 (No.2). pp. 167-180. doi:10.1007/s10969-010-9090-y

Report

Craig, Iain D. and Wilson, David H. (1987) CONFER : a knowledge system for bio-process control. University of Warwick. Department of Computer Science. (Department of Computer Science research report). (Unpublished)

Thesis

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Baker, Paul (Researcher in biological sciences) (1997) The distribution and diversity of actinomycetes in soil fractions. PhD thesis, University of Warwick.

Barker, Zoe Elizabeth (2007) Epidemiology of lameness in dairy cows. PhD thesis, University of Warwick.

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Bickerton, Erica Jane (2010) Cellular tropism and cell-to-cell fusion properties of the infectious bronchitis virus spike glycoprotein. PhD thesis, University of Warwick.

Boachie, Joseph (2019) The role of vitamin B12 deficiency on hepatic metabolism of lipids. PhD thesis, University of Warwick.

Bouchekhima, Abdnacer (2009) Quantification of the plant endoplasmic reticulum. PhD thesis, University of Warwick.

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Brown, Richard Henry (1969) A study of the cell envelope of Halobacterium salinarium. PhD thesis, University of Warwick.

Callaghan, Anastasia J. (2000) The regulatory protein and component interactions of soluble methane monooxygenase. PhD thesis, University of Warwick.

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Chaivimol, Jittra (1995) The study of peptide toxins from freshwater cyanobacteria. PhD thesis, University of Warwick.

Christian, Nigel David (2007) From biopiracy to bioprospecting: an historical sociology of the search for biological resources. PhD thesis, University of Warwick.

Clarke, Ian Nicholas (1982) Genomic variation in rotaviruses. PhD thesis, University of Warwick.

Clarke, Nicholas I. (2018) Development of a new genetically-encoded tag for correlative light electron microscopy. PhD thesis, University of Warwick.

Collier, Sharon (2017) Image based modelling of bleb site selection. PhD thesis, University of Warwick.

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Currie, Cerys E. (2019) Elucidating the role of Bub1 in human checkpoint signalling. PhD thesis, University of Warwick.

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Da Costa, Maria José Minhoto Diniz (2019) Cellular heterogeneity of the human endometrium : transcriptomic deconvolution and characterization of stem/progenitor cells. PhD thesis, University of Warwick.

Das Choudhury, Sruti (2013) Uniscale and multiscale gait recognition in realistic scenario. PhD thesis, University of Warwick.

Davies, Siân Elizabeth Wynne (2013) Transcription factor interactions at the promoter of the Arabidopsis circadian clock gene LHY. PhD thesis, University of Warwick.

Di Maiuta, Nicola (2010) Characterisation of mixed microbial populations in white mineral dispersions. PhD thesis, University of Warwick.

Di Monaco, Marisa (2020) Molecular mechanisms and transcriptional regulation of starvation induced autophagy in drosophila. PhD thesis, University of Warwick.

Downey, Mike J. (2012) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PhD thesis, University of Warwick.

Du Lac, Melchior (2017) Modelling and simulation of heterogeneous growth dynamics in bacterial populations using a novel multiphasic growth method. PhD thesis, University of Warwick.

Esparza Franco, Manuel A. (2016) A systems biology analysis of feedback control in pheromone signalling of fission yeast. PhD thesis, University of Warwick.

Essa, Sahar Sultan (2001) A study on the cell mediated immunity of human cytomegalovirus infection in kidney transplant recipients. PhD thesis, University of Warwick.

Fayter, Alice E. R. (2020) Understanding natural and synthetic ice-active materials to aid in the development of new cryoprotective formulations. PhD thesis, University of Warwick.

Feng, Song (2015) Exploring design principles of cellular information processing. PhD thesis, University of Warwick.

Finch, Jessica A. (2019) The role of cell cycle regulation in immunity-induced root growth inhibition in Arabidopsis thaliana. PhD thesis, University of Warwick.

Fitton, Ben (2016) A study of the interaction of end-binding proteins with microtubules. PhD thesis, University of Warwick.

Ghosal, Ritika (2018) Hyoid Neural Crest Migration and the Evolution of Tetrapod Novelties. PhD thesis, University of Warwick.

Hall, Vincent Austin (2014) Self organising map machine learning approach to pattern recognition for protein secondary structures and robotic limb control. PhD thesis, University of Warwick.

Hilton, Gillian R. (2009) Mass spectrometry-based studies of synthetic and natural macromolecules. PhD thesis, University of Warwick.

Holness, Claire Louise Lesley (1989) Isolation and characterisation of mutants of cowpea mosaic virus. PhD thesis, University of Warwick.

Jiménez Roldán, J. E. (José Emilio) (2012) Rigidity analysis of protein structures and rapid simulations of protein motion. PhD thesis, University of Warwick.

Jones, Ian Martin (1984) Plasmid segregational stability in 'Escherichia coli'. PhD thesis, University of Warwick.

Kerr, Gary W. (2013) The role of protein phosphatase PP2ACdc55 during meiosis in Saccharomyces cerevisiae. PhD thesis, University of Warwick.

Kowalczyk, Agnieszka (2013) Role of microbial adaptation in the biodegradation of chemical pollutants : extrapolation from laboratory to rivers. PhD thesis, University of Warwick.

Kuey, Cansu (2021) Reconstitution of intracellular clathrin-coated vesicle formation. PhD thesis, University of Warwick.

Lal, Suchita K. (2013) The role of corticotropin-releasing hormone (CRH) in cellular models of breast cancer. PhD thesis, University of Warwick.

Langmead, Olivia (2002) Coral community dynamics and disturbances : a modelling approach for Caribbean coral reefs. PhD thesis, University of Warwick.

Lim, Tzer Chyn (2020) Studies of cytokinesis in fission yeast protoplast. PhD thesis, University of Warwick.

Ling, Roger (1988) Polypeptides of murine and avian pneumoviruses. PhD thesis, University of Warwick.

Lloyd, John S. (1997) Heterologous expression and site-directed mutagenesis of soluble methane monoxygenase. PhD thesis, University of Warwick.

Locke, James C. W. (2006) A systems biology approach to the Arabidopsis circadian clock. PhD thesis, University of Warwick.

Lockley, Robert (2015) Image-based modelling of cell reorientation. PhD thesis, University of Warwick.

Lowe, Lawrence (1976) An investigation into the applications of real-time computing techniques in industrial audiometry. PhD thesis, University of Warwick.

Luo, Jamie X. (2012) Functionality and sensing in Boolean networks. PhD thesis, University of Warwick.

Martucci, Sophie Marie (2020) The role and mechanisms of action of PMLII on regulating gene expression. PhD thesis, University of Warwick.

Mason, S. (1992) Studies on the cell-binding properties of the reovirus [sigma]1 protein. PhD thesis, University of Warwick.

McKelvey, Kim M. (Kim Martin) (2012) New approaches and applications in electrochemical scanning probe microscopy. PhD thesis, University of Warwick.

Meadows, Katherine E. (2013) New approaches to the study of biophysicochemical processes. PhD thesis, University of Warwick.

Messin, Liam J. (2017) Spatial control of microtubule shrinkage. PhD thesis, University of Warwick.

Morris, Andrew John (1997) Representing spatial interactions in simple ecological models. PhD thesis, University of Warwick.

Morris, Nathan (Nathan Z.) (2000) Molecular detection of type II polyketide synthase genes in Cuban soils. PhD thesis, University of Warwick.

Mulakkal, Nitha Charles (2016) Molecular mechanisms of selective autophagy in Drosophila melanogaster. PhD thesis, University of Warwick.

Naskar, Souvik (2019) Heterologous expression and in-vitro analysis of Streptococcus pneumoniae FtsEX divisome complex with peptidoglycan (PG) hydrolase PcsB and actin homologue FtsA, required for PG remodelling and cell separation. PhD thesis, University of Warwick.

Naylor, Richard William (2009) An investigation into how the cell cycle and the Notch signalling pathway regulate pronephrogenesis in Xenopus laevis. PhD thesis, University of Warwick.

Nelis, Stuart (2014) An investigation into the role and mechanism of action of small ubiquitin-like modifier interacting motifs in Arabidopsis thaliana proteins. PhD thesis, University of Warwick.

O'Grady, Christopher James (2019) The structure and function of microbial communities at the soil-atmosphere interface. PhD thesis, University of Warwick.

Page, Ashley M. (2017) Multifunctional scanning ion conductance microscopy. PhD thesis, University of Warwick.

Panetta, Pamela (2021) Characterization of O-GlcNAc signalling in human placenta. PhD thesis, University of Warwick.

Patel, Vibhuti J. (2009) Novel mass spectrometry-based approaches for the characterisation of systems of biological interest. PhD thesis, University of Warwick.

Peet, Daniel R. (2015) Mechanical inhibition of microtubule depolymerisation by kinesin. PhD thesis, University of Warwick.

Powell, Hayley Victoria (2009) Development and application of evanescent wave cavity ring-down spectroscopy as a probe of biologically relevant interfaces. PhD thesis, University of Warwick.

Prayogo, Cahyo (2013) Carbon storage and sequestration under different land uses with a focus on biomass crops. PhD thesis, University of Warwick.

Pritchard, Jane (1999) Analysis of drongo, a new Drosophila zinc finger gene expressed during oogenesis and neurogenesis. PhD thesis, University of Warwick.

Rana, Anas A. (2014) Stochastic models for cell populations undergoing transitions. PhD thesis, University of Warwick.

Richardson, Kathryn (2014) Mechanisms of GPCR signal regulation in fission yeast. PhD thesis, University of Warwick.

Robertson, Fiona E. (1996) Starvation-survival in Escherichia coli. PhD thesis, University of Warwick.

Rostain, William (2017) Engineering of RNA sensors and actuators in living cells. PhD thesis, University of Warwick.

Sanghera, Narinder (2001) The interaction of the prion protein with lipid membranes and implications for prion conversion. PhD thesis, University of Warwick.

Seniya, Chandrabhan (2018) A flexible low-cost quantitative phase imaging microscopy system for label-free imaging of multi-cellular biological samples. PhD thesis, University of Warwick.

Serrano, Eduardo Goicoechea (2019) Development of phage-assisted evolution and riboregulation strategies. PhD thesis, University of Warwick.

Seveno, Nadine Antoinette (2000) Phenazine antibiotic production in liquid culture, on surface agar, and on plant roots by Pseudomonas aureofaciens PGS12. PhD thesis, University of Warwick.

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Dataset

Chapman, Lloyd A. C. (2017) Data for Policy recommendations from transmission modelling for the elimination of visceral leishmaniasis in the Indian subcontinent. [Dataset]

Collier, Sharon, Paschke, Peggy, Kay, Robert R. and Bretschneider, Till (2017) Data for Image based modeling of bleb site selection. [Dataset]

Hasan, Muhammad, Fayter, Alice E. R. and Gibson, Matthew I. (2018) Data for Ice recrystallization inhibiting polymers enable glycerol-free cryopreservation of microorganisms. [Dataset]

Tomás, Ruben M. F., Bailey, Trisha L., Hasan, Muhammad and Gibson, Matthew I. (2020) Data for Extracellular antifreeze protein significantly enhances the cryopreservation of cell monolayers. [Dataset]