Journal Article

Abrams, William R., Madsen, Jens, Gaiha, Gaurav D., Palaniyar, Nades, Dong, Tao, Mitchell, Daniel A. and Clark, Howard W. (2013) Surfactant protein D modulates HIV infection of both T-cells and dendritic cells. PLoS One, Volume 8 (Number 3). Article no. e59047. doi:10.1371/journal.pone.0059047

Achtman, Mark (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. doi:10.1371/journal.pgen.1002255

Adams, Sally, Manfield, Ian, Stockley, Peter and Carré, Isabelle A. (2015) Revised morning loops of the Arabidopsis circadian clock based on analyses of direct regulatory interactions. PLoS One, 10 (12). e0143943. doi:10.1371/journal.pone.0143943

Al-Izzi, Sami C., Rowlands, George, Sens, Pierre and Turner, Matthew S. (2018) Hydro-osmotic instabilities in active membrane tubes. Physical Review Letters, 120 (13). 138102. doi:10.1103/PhysRevLett.120.138102

Al-Lehyani, Ibrahim H., Grime, John M. A., Bano, Matthew, McKelvey, Kim M. (Kim Martin) and Allen, M. P. (2013) Coarse-grained simulation of transmembrane peptides in the gel phase. Journal of Computational Physics, Volume 238 . pp. 97-105. doi:10.1016/j.jcp.2012.12.014

Amin, Munia, Porter, Steven L. and Soyer, Orkun S. (2013) Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks. PLoS Computational Biology, Volume 9 (Number 3). Article no. e1002949. doi:10.1371/journal.pcbi.1002949

Amin, Nader T., Wallis, A. Katrine, Wells, Stephen A., Rowe, Michelle L., Williamson, Richard A., Howard, Mark J. and Freedman, R. B. (2013) High-resolution NMR studies of structure and dynamics of human ERp27 indicate extensive interdomain flexibility. Biochemical Journal, Volume 450 (Number 2). pp. 321-332. doi:10.1042/BJ20121635

Armond, Jonathan W., Saha, Krishanu, Rana, Anas A., Oates, Chris J., Jaenisch, Rudolf, Nicodemi, Mario and Mukherjee, Sach (2014) A stochastic model dissects cell states in biological transition processes. Scientific Reports, Volume 4 . Article number 3692. doi:10.1038/srep03692

Armond, Jonathan W., Vladimirou, Elina, Erent, Muriel, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Probing microtubule polymerisation state at single kinetochores during metaphase chromosome motion. Journal of Cell Science, Volume 128 (Number 10). pp. 1991-2001. doi:10.1242/jcs.168682

Arnoldt, Hinrich, Timme, Marc and Grosskinsky, Stefan (2012) Frequency-dependent fitness induces multistability in coevolutionary dynamics. Journal of The Royal Society Interface, Vol.9 (No.77). pp. 3387-3396. doi:10.1098/rsif.2012.0464

Baker, Ysobel R., Chen, Jinfeng, Brown, Jason, El-Sagheer, Afaf H., Wiseman, Philip, Johnson, Errin, Goddard, Paul and Brown, Tom (2018) Preparation and characterization of manganese, cobalt and zinc DNA nanoflowers with tuneable morphology, DNA content and size. Nucleic Acids Research, 46 (15). pp. 7495-7505. doi:10.1093/nar/gky630

Baniukiewicz, Piotr, Collier, Sharon and Bretschneider, Till (2018) QuimP : analyzing transmembrane signalling in highly deformable cells. Bioinformatics . bty169. doi:10.1093/bioinformatics/bty169 (In Press)

Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf and Blindauer, Claudia A. (2012) Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, Volume 3 . Article number 142. doi:10.3389/fmicb.2012.00142

Barnett, James P., Dr., Blindauer, Claudia A., Kassaar, Omar, Khazaipoul, Siavash, Martin, Esther M., Sadler, P. J. and Stewart, Alan J. S. (2013) Allosteric modulation of zinc speciation by fatty acids. Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 830 (Number 12). doi:10.1016/j.bbagen.2013.05.028

Baronchelli, Andrea, Chater, Nick, Christiansen, Morten H. and Pastor-Satorras, R. (2013) Evolution in a changing environment. PLoS ONE, Vol.8 (No.1). e52742. doi:10.1371/journal.pone.0052742

Baronchelli, Andrea, Chater, Nick, Pastor-Satorras, R. and Christiansen, Morten H. (2012) The biological origin of linguistic diversity. PLoS One, Vol.7 (No.10). e48029. doi:10.1371/journal.pone.0048029

Berg, Hugo van den , Ladell, Kristin, Miners, Kelly, Laugel, Bruno, Llewellyn-Lacey, Sian, Clement, Mathew, Cole, David K., Gostick, Emma, Wooldridge, L., Sewell, Andrew K., Bridgeman, John S. and Price, D. A. (2013) Cellular-level versus receptor-level response threshold hierarchies in T-Cell activation. Frontiers in Immunology, Volume 4 . Article number 200. doi:10.3389/fimmu.2013.00250

Bila, J., Mortensen, C. N., Andresen, M., Vicente, Joana G. and Wulff, E. G. (2013) Xanthomonas campestris pv. campestris race 1 is the main causal agent of black rot of Brassicas in Southern Mozambique. African Journal of Biotechnology, Volume 12 (Number 6). pp. 602-610.

Bingle, Lewis E. H., Constantinidou, Chrystala, Shaw, Robert K., Islam, Md. Shahidul, Patel, Mala, Snyder, Lori A. S., Lee, David J., Penn, C. W., Busby, Stephen J. W. and Pallen, Mark J. (2014) Microarray analysis of the ler regulon in enteropathogenic and enterohaemorrhagic escherichia coli strains. PLoS One, Volume 9 (Number 1). e80160. doi:10.1371/journal.pone.0080160

Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves , Carré, Isabelle A., Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, Piégu, Benoit, Rivals, Eric , Schackwitz, Wendy, Peer, Yves van de and Piganeau, Gwenaël (2014) An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics, Volume 15 . pp. 1-11. Article number 1103. doi:10.1186/1471-2164-15-1103

Bland, C., Hartmann, E. M., Christie-Oleza, Joseph Alexander, Fernandez, Bernard and Armengaud, J. (2014) N-Terminal-oriented proteogenomics of the marine bacterium Roseobacter Denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography. Molecular & Cellular Proteomics, Volume 13 (Number 5). pp. 1369-1381. doi:10.1074/mcp.O113.032854

Bridges, Rebecca G., Sohn, Sook-Young, Wright, Jordan L., Leppard, Keith and Hearing, Patrick (2016) The adenovirus E4-ORF3 protein stimulates SUMOylation of general transcription factor TFII-I to direct proteasomal degradation. mBio, 7 (1). e02184-15. doi:10.1128/mBio.02184-15

(2014) Uterine selection of human embryos at implantation. Scientific Reports, Volume 4 . Article number 3894. doi:10.1038/srep03894

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248

Brumley, Douglas R., Polin, Marco, Pedley, T. J. and Goldstein, Raymond E. (2015) Metachronal waves in the flagellar beating of Volvox and their hydrodynamic origin. Interface, Number 12 . pp. 1-12. Article number 20141358. doi:10.1098/rsif.2014.1358

Bräutigam, Katharina, Vining, Kelly J., Lafon-Placette, Clément, Fossdal, Carl G., Mirouze, Marie, Jose, Gutiérrez-Marcos, Fluch, Silvia, Fraga, Mario Fernández, Guevara, M. Ángeles, Abarca, Dolores, Johnsen, Øystein, Maury, Stéphane, Strauss, Steven H., Campbell, Malcolm M., Rohde, Antje, Díaz-Sala, Carmen and Cervera, María-Teresa (2013) Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, Volume 3 (Number 2). pp. 399-415. doi:10.1002/ece3.461

Bugg, Tim (2012) Biosynthesis : imaging cell-wall biosynthesis live. Nature Chemistry, Vol.5 (No.1). pp. 10-12. doi:10.1038/nchem.1538

Burgess, Selena G., Mukherjee, Manjeet, Sabir, Sarah, Joseph, Nimesh, Gutiérrez-Caballero, Christina, Richards, Mark W., Huguenin‐Dezot, Nicolas, Chin, Jason W., Kennedy, Eileen J., Pfuhl, Mark, Royle, Stephen J., Gergely, Fanni and Bayliss, Richard (2018) Mitotic spindle association of TACC3 requires Aurora‐A‐dependent stabilization of a cryptic α‐helix. The EMBO Journal, 37 (8). e97902. doi:10.15252/embj.201797902

Busi, R. (Roberto), Neve, Paul and Powles, Stephen B. (2013) Evolved polygenic herbicide resistance in Lolium rigidum by low-dose herbicide selection within standing genetic variation. Evolutionary Applications, Volume 6 (Number 2). pp. 231-242. doi:10.1111/j.1752-4571.2012.00282.x

Busi, Roberto, Vila-Aiub, Martin M., Beckie, Hugh John, Gaines, Todd A., Goggin, Danica E., Kaundun, Shiv S., Lacoste, Myrtille, Neve, Paul, Nissen, Scott Jay, Norsworthy, Jason K., Renton, M., Shaner, Dale L., Tranel, Patrick J., Wright, Terry R., Yu, Qin and Powles, Stephen B. (2013) Herbicide-resistant weeds : from research and knowledge to future needs. Evolutionary Applications, Volume 6 (Number 8). pp. 1218-1221. doi:10.1111/eva.12098

Carbonero, Franck, Oakley, Brian B. and Purdy, Kevin J. (2014) Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One, Volume 9 (Number 1). Article number e85105. doi:10.1371/journal.pone.0085105

Carpenter, Byron and Tate, Christopher G. (2017) Active state structures of G protein-coupled receptors highlight the similarities and differences in the G protein and arrestin coupling interfaces. Current Opinion in Structural Biology, 45 . pp. 124-132. doi:10.1016/j.sbi.2017.04.010

Carrera, Javier and Jaramillo, Alfonso (2013) Automated design of bacterial genome sequences. BMC Systems Biology, Volume 7 (Number 1). Article number 108. doi:10.1186/1752-0509-7-108

Carslake, David, Grant, Wyn, Green, Laura E., Cave, Jonathan A. K., Greaves, Justin, Keeling, Matthew James, McEldowney, John F., Weldegebriel, Habtu Tadesse and Medley, Graham (2011) Endemic cattle diseases : comparative epidemiology and governance. Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol.366 (No.1573). pp. 1975-1986. doi:10.1098/rstb.2010.0396

Carslake, David, Townley, Stuart and Hodgson, David J. (2009) Patterns and rules for sensitivity and elasticity in population projection matrices. Ecology, Vol.90 (No.11). pp. 3258-3267. doi:10.1890/08-1188.1

Carter, Anthony D., Bonyadi, Roxanna and Gifford, Miriam L. (2013) The use of fluorescence-activated cell sorting in studying plant development and environmental responses. The International Journal of Developmental Biology, Volume 57 . pp. 545-552. doi:10.1387/ijdb.130195mg

Castro, Thiago L. P., Seyffert, Nubia, Ramos, Rommel T. J., Barbosa, Silvanira, Carvalho, Rodrigo D. O., Pinto, Anne Cybelle, Carneiro, Adriana Ribeiro, Silva, Wanderson Marques, Pacheco, Luis G. C., Downson, Christopher G., Schneider, Maria P. C., Miyoshi, Anderson, Azevedo, V. (Vasco) and Silva, Artur (2013) Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method. Microbial Biotechnology, Volume 6 (Number 2). pp. 168-177. doi:10.1111/1751-7915.12020

Caudron, Quentin, Donnelly, Simon R., Brand, Samuel and Timofeeva, Yulia (2012) Computational convergence of the path integral for real dendritic morphologies. The Journal of Mathematical Neuroscience, Volume 2 (Number 1). doi:10.1186/2190-8567-2-11

Chan, Jacqueline, Halachev, Mihail R., Loman, Nicholas J., Constantinidou, Chrystala and Pallen, Mark J. (2012) Defining bacterial species in the genomic era : insights from the genus Acinetobacter. BMC Microbiology, 12 (1). 302. doi:10.1186/1471-2180-12-302

Chen, Li I., Sooranna, Suren R., Lei, Kaiyu, Kandola, Mandeep, Bennett, Phillip, Liang, Zhiqing, Grammatopoulos, Dimitris and Johnson, Mark R. (2012) Cyclic AMP increases COX-2 expression via mitogen-activated kinase in human myometrial cells. Journal of Cellular and Molecular Medicine, Volume 16 (Number 7). pp. 1447-1460. doi:10.1111/j.1582-4934.2011.01413.x

Chen, Yixiang, Wright, Jordan L., Meng, Xueqiong and Leppard, Keith (2015) Promyelocytic leukemia protein isoform II promotes transcription factor recruitment to activate interferon β and interferon-responsive gene expression. Molecular and Cellular Biology, Volume 35 (Number 10). pp. 1660-1672. doi:10.1128/MCB.01478-14

Chew, Ting Gang, Huang, Junqi, Palani, Saravanan, Sommese, Ruth, Kamnev, Anton, Hatano, Tomoyuki, Gu, Ying, Oliferenko, Snezhana, Sivaramakrishnan, Sivaraj and Balasubramanian, Mohan K. (2017) Actin turnover maintains actin filament homeostasis during cytokinetic ring contraction. The Journal of Cell Biology, 216 (9). 2657. doi:10.1083/jcb.201701104

Christie-Oleza, Joseph Alexander and Armengaud, Jean (2010) In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry : the Ruegeria pomeroyi DSS-3 case-study. Marine Drugs, Volume 8 (Number 8). pp. 2223-2239. doi:10.3390/md8082223

The Genographic Consortium (Including: Clarke, Andrew C., Prost, Stefan, Stanton, Jo-Ann L., White, W Timothy J., Kaplan, Matthew E. and Matisoo-Smith, Lisa). (2014) From cheek swabs to consensus sequences : an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. BMC Genomics, Volume 15 (Number 1). Article number 68. doi:10.1186/1471-2164-15-68

Clarke, Nicholas I. and Royle, Stephen J. (2018) FerriTag is a new genetically-encoded inducible tag for correlative light-electron microscopy. Nature Communications, 9 (1). 2604. doi:10.1038/s41467-018-04993-0

Click, Arielle, Savaliya, Chandni H, Kienle, Simone, Herrmann, Matthias and Pires-da Silva, André Francisco (2009) Natural variation of outcrossing in the hermaphroditic nematode Pristionchus pacificus. BMC Evolutionary Biology, Volume 9 (Number 1). Article no.75. doi:10.1186/1471-2148-9-75

Collier, Sharon, Paschke, Peggy, Kay, Robert R. and Bretschneider, Till (2017) Image based modeling of bleb site selection. Scientific Reports, 7 . 6692. doi:10.1038/s41598-017-06875-9

Constantinidou, Chrystala, Sergeant, Martin J., Cogan, Tristan, Penn, Charles W. and Pallen, Mark J. (2012) High-throughput sequencing of 16S rRNA gene amplicons : effects of extraction procedure, primer length and annealing temperature. PLoS One, Volume 7 (Number 5). Article number e38094. doi:10.1371/journal.pone.0038094

Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Woodcock, Ailidh, Swarup, Ranjan, Galbiati, Massimo, Tonelli, Chiara, Napier, R., Hedden, Peter, Bennett, Malcolm J. and Sadanandom, Ari (2014) Small ubiquitin-like modifier protein, SUMO enables plants to control growth independently of the phytohormone gibberellin. Developmental Cell, Volume 28 (Number 1). pp. 102-110. doi:10.1016/j.devcel.2013.12.004

Contino, Matteo, Lushi, Enkeleida, Tuval, Idan, Kantsler, Vasily and Polin, Marco (2015) Microalgae scatter off solid surfaces by hydrodynamic and contact forces. Physical Review Letters, 115 (25). pp. 1-5. 258102. doi:10.1103/PhysRevLett.115.258102

Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020

Daniels, D. Robert and Turner, Matthew S. (2013) Islands of conformational stability for Filopodia. PLoS One, Volume 8 (Number 3). Article no. e59010. doi:10.1371/journal.pone.0059010

Datta, Samik, Bull, James C., Budge, Giles E. and Keeling, Matthew James (2013) Modelling the spread of American foulbrood in honeybees. Journal of The Royal Society Interface, Volume 10 (Number 88). Article number 20130650. doi:10.1098/rsif.2013.0650

Davies, Lawrence O., Schäfer, Hendrik, Marshall, Samantha, Bramke, Irene, Oliver, Robin G. and Bending, G. D. (2013) Light structures phototroph, bacterial and fungal communities at the soil surface. PLoS One, Volume 8 (Number 7). Article number e69048. doi:10.1371/journal.pone.0069048

Dawson, Peter Michael, Werkman, Marleen, Brooks-Pollock, Ellen and Tildesley, Michael J. (2015) Epidemic predictions in an imperfect world : modelling disease spread with partial data. Proceedings of the Royal Society B: Biological Sciences, Volume 282 (Number 1808). Article number 20150205. doi:10.1098/rspb.2015.0205

Deller, Robert C., Pessin, Jeffrey E., Vatish, Manu, Mitchell, Daniel A. and Gibson, Matthew I. (2016) Enhanced non-vitreous cryopreservation of immortalized and primary cells by ice-growth inhibiting polymers. Biomaterials Science, 4 (7). pp. 1079-1084. doi:10.1039/c6bm00129g

Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. doi:10.1371/journal.pgen.1002191

Dilly, Suzanne J., Beecham, Matthew P., Brown, Steven P., Griffin, John M., Clark, Andrew J., Griffin, Craig D., Marshall, Jacqueline, Napier, R. (Richard), Taylor, Paul C. and Marsh, Andrew (2006) Novel tertiary amine oxide surfaces that resist non-specific protein adsorption. Langmuir, Vol.22 (No.19). pp. 8144-8150. doi:10.1021/la060743j

Dow, Claire E., Rodger, Alison, Roper, David I. and Berg, Hugo van den (2013) A model of membrane contraction predicting initiation and completion of bacterial cell division. Integrative Biology (Number 5). pp. 778-795. doi:10.1039/c3ib20273a

Dowler, Elizabeth (2012) Philip Reid Payne, Professor of Nutrition, London School of Hygiene and Tropical Medicine (30 July 1928–9 January 2012). Proceedings of the Nutrition Society, Volume 71 (Number 4). pp. 639-640. doi:10.1017/S0029665112000286

Dowling, Andrea J., Wilkinson, Paul A., Holden, Matthew T. G., Quail, Michael A., Bentley, Stephen D., Reger, Julia, Waterfield, Nicholas R., Titball, Richard W. and ffrench-Constant, Richard H. (2010) Genome-wide analysis reveals loci encoding anti-macrophage factors in the human pathogen burkholderia pseudomallei K96243. PLoS One, Volume 5 (Number 12). Article number e15693. doi:10.1371/journal.pone.0015693

Drechsler, Hauke and McAinsh, Andrew D. (2012) Exotic mitotic mechanisms. Open Biology, Vol.2 . Article number 120140. doi:10.1098/rsob.120140

Du, Cheng-Jin, Hawkins, Phillip T., Stephens, Len R. and Bretschneider, Till (2013) 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics, Volume 14 (Number 1). Article number 296. doi:10.1186/1471-2105-14-296

Dudka, Damian, Noatynska, Anna, Smith, Christopher, A., Liaudet, Nicolas, McAinsh, Andrew D. and Meraldi, Patrick (2018) Complete microtubule–kinetochore occupancy favours the segregation of merotelic attachments. Nature Communications, 9 (1). doi:10.1038/s41467-018-04427-x

Dyson, Louise, Holmes, Alexander, Li, Ang and Kulesa, Paul M. (2018) A chemotactic model of trunk neural crest cell migration. Genesis: The Journal of Genetics and Development . e23239. doi:10.1002/dvg.23239 (In Press)

(2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. doi:10.1007/s10577-013-9347-y

Eichmann, Ruth and Schäfer, P. (Patrick) (2012) The endoplasmic reticulum in plant immunity and cell death. Frontiers in Plant Science, Volume 3 . Article number 200. doi:10.3389/fpls.2012.00200

Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David and Bohlmann, Holger (2013) The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiology and Biochemistry, Volume 70 . pp. 379-386. doi:10.1016/j.plaphy.2013.05.016

Elias, Dafydd M. O., Rowe, Rebecca L., Pereira, M. Glória, Stott, Andrew W., Barnes, Christopher J., Bending, G. D. and McNamara, Niall P. (2017) Functional differences in the microbial processing of recent assimilates under two contrasting perennial bioenergy plantations. Soil Biology and Biochemistry, 114 . pp. 248-262. doi:10.1016/j.soilbio.2017.07.026

Elliott, Charles M., Graser, Carsten, Hobbs, Graham, Kornhuber, R. and Wolf, Maren-Wanda (2016) A variational approach to particles in lipid membranes. Archive for Rational Mechanics and Analysis, 222 (2). pp. 1011-1075. doi:10.1007/s00205-016-1016-9

Elliott, Charles M., Stinner, Björn and Venkataraman, Chandrasekhar (2012) Modelling cell motility and chemotaxis with evolving surface finite elements. Journal of The Royal Society Interface, Volume 9 (Number 76). pp. 3027-3044. doi:10.1098/rsif.2012.0276

(2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. doi:10.4056/sigs.3406845

Eskat, Anja, Deng, Wen, Hofmeister, Antje, Rudolphi, Sven, Emmerth, Stephan, Hellwig, Daniela, Ulbricht, Tobias, Döring, Volker, Bancroft, James M., McAinsh, Andrew D., Cardoso, M. Cristina, Meraldi, Patrick, Hoischen, Christian, Leonhardt, Heinrich and Diekmann, Stephan (2012) Step-wise assembly, maturation and dynamic behavior of the human CENP-P/O/R/Q/U kinetochore sub-complex. PLoS One, Vol.7 (No.9). e44717. doi:10.1371/journal.pone.0044717

Evans, Neil D. (2013) Controlling nonlinear infinite-dimensional systems via the initial state. SIAM Journal on Control and Optimization, 51 (5). pp. 3757-3780. doi:10.1137/110823080

Eyice, Özge, Namura, Motonobu, Chen, Yin, Mead, A. (Andrew), Samavedam, Siva and Schäfer, Hendrik (2015) SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment. The ISME Journal . pp. 1-13. doi:10.1038/ismej.2015.37

Fabre, Laëtitia, Zhang, Jian, Guigon, Ghislaine, Le Hello, Simon, Guibert, Véronique, Accou-Demartin, Marie, de Romans, Saïana, Lim, Catherine, Roux, Chrystelle, Passet, Virginie, Diancourt, Laure, Guibourdenche, Martine, Issenhuth-Jeanjean, Sylvie, Achtman, Mark, Brisse, Sylvain, Sola, Christophe and Weill, François-Xavier (2012) CRISPR typing and subtyping for improved laboratory surveillance of salmonella infections. PLoS One, Volume 7 (Number 5). Article number e36995. doi:10.1371/journal.pone.0036995

Feeney, Mistianne, Frigerio, Lorenzo, Kohalmi, Susanne E., Cui, Yuhai and Menassa, Rima (2013) Reprogramming cells to study vacuolar development. Frontiers in Plant Science, Volume 4 . Article number 493. doi:10.3389/fpls.2013.00493

Feillet, Céline‏, Horst, Gijsbertus Theodorus Johannes van der‏, Lévi, Francis A., Rand, D. A. and Delaunay, Franck (2015) Coupling between the circadian clock and cell cycle oscillators : implication for healthy cells and malignant growth. Frontiers in Neurology, Volume 6 . Article number 96. doi:10.3389/fneur.2015.00096

Firczuk, Helena, Kannambath, Shichina, Pahle, Jürgen, Claydon, Amy J., Beynon, R. J. (Robert J.), Duncan, John, Westerhoff, Hans V., Mendes, Pedro and McCarthy, John E. G. (2013) An in vivo control map for the eukaryotic mRNA translation machinery. Molecular Systems Biology, Vol.9 . p. 635. doi:10.1038/msb.2012.73

Font-Burgada, Joan, Reina, Oscar, Rossell, David and Azorin, Fernando (2013) chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome. Nucleic Acids Research, Volume 42 (Number 4). pp. 2126-2137. doi:10.1093/nar/gkt1186

Footitt, Steven, Huang, Ziyue, Clay, Heather A., Mead, A. (Andrew) and Finch-Savage, William E. (2013) Temperature, light and nitrate sensing coordinate Arabidopsis seed dormancy cycling resulting in winter and summer annual phenotypes. Plant Journal, Volume 74 (Number 6). pp. 1003-1015. doi:10.1111/tpj.12186

Forrest, Michael D. (2013) Mathematical model of bursting in dissociated Purkinje neurons. PLoS One, Volume 8 (Number 8). e68765. doi:10.1371/journal.pone.0068765

Forrest, Michael D., Wall, Mark J., Press, Daniel A. and Feng, Jianfeng (2012) The sodium-potassium pump controls the intrinsic firing of the cerebellar Purkinje neuron. PLoS ONE, Vol.7 (No.12). e51169. doi:10.1371/journal.pone.0051169

Freedman, R. B. (2009) A non-catalytic disulphide bond regulating redox flux in the ER oxidative folding pathway. EMBO Journal, Vol.28 . pp. 169-170. doi:10.1038/emboj.2008.293

Fuchs, Evelyn, Hass, Alexander K., Spooner, Robert A. , Yoshimura, Shin-ichiro , Lord, Mike and Barr, Francis A. (2007) Specific Rab GTPase-activating proteins define the Shiga toxin and epidermal growth factor uptake pathways. Journal of Cell Biology, Vol.177 (No.6). pp. 1133-1143. doi:10.1083/jcb.200612068

García-Nafría, Javier, Lee, Yang, Bai, Xiaochen, Carpenter, Byron and Tate, Christopher G. (2018) Cryo-EM structure of the adenosine A2A receptor coupled to an engineered heterotrimeric G protein. eLife, 2018 (7). e35946. doi:10.7554/eLife.35946

Ge, Tian, Kendrick, Keith M. and Feng, Jianfeng (2009) A novel extended Granger Causal model approach demonstrates brain hemispheric differences during face recognition learning. PL o S Computational Biology, Vol.5 (No.11). doi:10.1371/journal.pcbi.1000570

Ge, Tian, Tian, Xiaoying, Kurths, Jürgen, Feng, Jianfeng and Lin, Wei (2014) Achieving modulated oscillations by feedback control. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Volume 90 (Number 2). Article number 022909. doi:10.1103/PhysRevE.90.022909

Gerc, Amy J., Song, Lijiang, Challis, Gregory L., Stanley-Wall, Nicola R. and Coulthurst, Sarah J. (2012) The insect pathogen Serratia marcescens Db10 uses a hybrid non-ribosomal peptide synthetase-polyketide synthase to produce the antibiotic althiomycin. PLoS One, Vol.7 (No.9). e44673. doi:10.1371/journal.pone.0044673

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(2014) Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Molecular Cell, Volume 53 (Number 3). pp. 369-379. doi:10.1016/j.molcel.2013.12.020

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Book Item

Valdes-Amaro, Daniel and Bhalerao, Abhir (2009) Unsupervised clustering using diffusion maps for local shape modelling. In: Moreno-Díaz, Roberto and Pichler, Franz, 1936- and Quesada-Arencibia, Alexis, (eds.) Computer Aided Systems Theory : EUROCAST 2009. Lecture Notes in Computer Science, Volume 5717 . Springer Berlin Heidelberg, pp. 342-349. ISBN 9783642047718

Conference Item

Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten and Nattkemper, Tim W. (2011) TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology pp. 1-5.

Sanassy, Daven, Fellermann, Harold, Krasnogor, Natalio, Konur, Savas, Mierla, Laurentiu M., Gheorghe, Marian, Ladroue, Christophe and Kalvala, Sara (2014) Modelling and stochastic simulation of synthetic biological Boolean gates. In: 2014 IEEE International Conference on High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS), Paris, 20-22 Aug 2014. Published in: High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS) pp. 404-408. ISBN 9781479961221. doi:10.1109/HPCC.2014.68

Tindjong, Rodrigue, Kaufman, Igor, Luchinsky, Dmitrii G., McClintock, P. V. E., Khovanov, I. A. and Eisenberg, Robert S. (2013) Stochastic dynamics of remote knock-on permeation in biological ion channels. In: 22nd International Conference on Noise and Fluctuations (ICNF), Montpellier, France, 24-28 June 2013. Published in: Noise and Fluctuations (ICNF), 2013 22nd International Conference on pp. 1-4. ISBN 978-1-4799-0668-0. doi:10.1109/ICNF.2013.6578893

Journal Item

Arasaradnam, Ramesh P. and Nwokolo, Chuka U. (2012) Epiphenomenon of telomere lengths : lessons from ulcerative colitis. Gut, Vol.61 (No.10). p. 1516. doi:10.1136/gutjnl-2012-302102

Liu, Kuo-Kang, Wu, Ren-Guei, Chuang, Yun-Ju, Khoo, Hwa Seng, Huang, Shih-Hao and Tseng, Fan-Gang (2010) Microfluidic systems for biosensing. Sensors, Vol.10 (No.7). pp. 6623-6661. doi:10.3390/s100706623

Nezis, I. P., Vaccaro, Maria I., Devenish, Rodney J. and Juhász, Gábor (2014) Autophagy in development, cell differentiation, and homeodynamics: from molecular mechanisms to diseases and pathophysiology. BioMed Research International, Volume 2014 . pp. 1-2. Article number 349623. doi:10.1155/2014/349623

Submitted Journal Article

(2010) The Scottish Structural Proteomics Facility : targets, methods and outputs. Journal of Structural and Functional Genomics, Vol.11 (No.2). pp. 167-180. doi:10.1007/s10969-010-9090-y

Report

Craig, Iain D. and Wilson, David H. (1987) CONFER : a knowledge system for bio-process control. University of Warwick. Department of Computer Science. (Department of Computer Science research report). (Unpublished)

Thesis or Dissertation

Ahmed, Usman (2013) Protein damage markers in diagnosis, progression and treatment of arthritis. PhD thesis, University of Warwick.

Arifin, Khaizurin T. (2013) Creating an orthogonal signalling pathway in S. cerevisiae. PhD thesis, University of Warwick.

Arnab, Sylvester (2009) Soft volume simulation using a deformable surface model. PhD thesis, University of Warwick.

Auckland, Philip (2016) Molecular analysis of chromosome movement by microtubule depolymerisation-coupled pulling. PhD thesis, University of Warwick.

Baird, Mark E. (1999) Towards a verified mechanistic model of plankton population dynamics. PhD thesis, University of Warwick.

Baker, Paul (Researcher in biological sciences) (1997) The distribution and diversity of actinomycetes in soil fractions. PhD thesis, University of Warwick.

Barker, Zoe Elizabeth (2007) Epidemiology of lameness in dairy cows. PhD thesis, University of Warwick.

Barr, John Nicholas (1993) Expression of the nucleoprotein and phosphoprotein genes of pneumonia virus of mice and specific interactions of the gene products. PhD thesis, University of Warwick.

Basu, Balaka Piku (2000) The particulate methane monooxygenase from Methylococcus capsulatus (Bath). PhD thesis, University of Warwick.

Bickerton, Erica Jane (2010) Cellular tropism and cell-to-cell fusion properties of the infectious bronchitis virus spike glycoprotein. PhD thesis, University of Warwick.

Bouchekhima, Abdnacer (2009) Quantification of the plant endoplasmic reticulum. PhD thesis, University of Warwick.

Bowyer, Jack E. (2018) Mechanistic mathematical models for the design of synthetic biological systems : DNA recombination, recombinase-based temporal logic gates and antibiotic production. PhD thesis, University of Warwick.

Brown, Richard Henry (1969) A study of the cell envelope of Halobacterium salinarium. PhD thesis, University of Warwick.

Callaghan, Anastasia J. (2000) The regulatory protein and component interactions of soluble methane monooxygenase. PhD thesis, University of Warwick.

Carvalho, Maria Suzana Balparda de (1983) Dynamical systems and games theory. PhD thesis, University of Warwick.

Christian, Nigel David (2007) From biopiracy to bioprospecting: an historical sociology of the search for biological resources. PhD thesis, University of Warwick.

Clarke, Ian Nicholas (1982) Genomic variation in rotaviruses. PhD thesis, University of Warwick.

Clarke, Nicholas I. (2018) Development of a new genetically-encoded tag for correlative light electron microscopy. PhD thesis, University of Warwick.

Collier, Sharon (2017) Image based modelling of bleb site selection. PhD thesis, University of Warwick.

Conder, Michael John (1984) Origin of glyoxysomal membrane proteins in castor bean endosperm. PhD thesis, University of Warwick.

Cotton-Barratt, Rebecca (2013) Modelling biological form in evolution. PhD thesis, University of Warwick.

Cutler, Daniel Franklin (1982) The secretion of chick proteins from Xenopus oocytes : an investigation into non-parallel secretion. PhD thesis, University of Warwick.

Das Choudhury, Sruti (2013) Uniscale and multiscale gait recognition in realistic scenario. PhD thesis, University of Warwick.

Davies, Siân Elizabeth Wynne (2013) Transcription factor interactions at the promoter of the Arabidopsis circadian clock gene LHY. PhD thesis, University of Warwick.

Di Maiuta, Nicola (2010) Characterisation of mixed microbial populations in white mineral dispersions. PhD thesis, University of Warwick.

Downey, Mike J. (2012) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PhD thesis, University of Warwick.

Du Lac, Melchior (2017) Modelling and simulation of heterogeneous growth dynamics in bacterial populations using a novel multiphasic growth method. PhD thesis, University of Warwick.

Esparza Franco, Manuel A. (2016) A systems biology analysis of feedback control in pheromone signalling of fission yeast. PhD thesis, University of Warwick.

Essa, Sahar Sultan (2001) A study on the cell mediated immunity of human cytomegalovirus infection in kidney transplant recipients. PhD thesis, University of Warwick.

Feng, Song (2015) Exploring design principles of cellular information processing. PhD thesis, University of Warwick.

Fitton, Ben (2016) A study of the interaction of end-binding proteins with microtubules. PhD thesis, University of Warwick.

Hall, Vincent Austin (2014) Self organising map machine learning approach to pattern recognition for protein secondary structures and robotic limb control. PhD thesis, University of Warwick.

Hilton, Gillian R. (2009) Mass spectrometry-based studies of synthetic and natural macromolecules. PhD thesis, University of Warwick.

Holness, Claire Louise Lesley (1989) Isolation and characterisation of mutants of cowpea mosaic virus. PhD thesis, University of Warwick.

Jiménez Roldán, J. E. (José Emilio) (2012) Rigidity analysis of protein structures and rapid simulations of protein motion. PhD thesis, University of Warwick.

Jones, Ian Martin (1984) Plasmid segregational stability in 'Escherichia coli'. PhD thesis, University of Warwick.

Kerr, Gary W. (2013) The role of protein phosphatase PP2ACdc55 during meiosis in Saccharomyces cerevisiae. PhD thesis, University of Warwick.

Kowalczyk, Agnieszka (2013) Role of microbial adaptation in the biodegradation of chemical pollutants : extrapolation from laboratory to rivers. PhD thesis, University of Warwick.

Lal, Suchita K. (2013) The role of corticotropin-releasing hormone (CRH) in cellular models of breast cancer. PhD thesis, University of Warwick.

Langmead, Olivia (2002) Coral community dynamics and disturbances : a modelling approach for Caribbean coral reefs. PhD thesis, University of Warwick.

Ling, Roger (1988) Polypeptides of murine and avian pneumoviruses. PhD thesis, University of Warwick.

Lloyd, John S. (1997) Heterologous expression and site-directed mutagenesis of soluble methane monoxygenase. PhD thesis, University of Warwick.

Locke, James C. W. (2006) A systems biology approach to the Arabidopsis circadian clock. PhD thesis, University of Warwick.

Lockley, Robert (2015) Image-based modelling of cell reorientation. PhD thesis, University of Warwick.

Lowe, Lawrence (1976) An investigation into the applications of real-time computing techniques in industrial audiometry. PhD thesis, University of Warwick.

Luo, Jamie X. (2012) Functionality and sensing in Boolean networks. PhD thesis, University of Warwick.

McKelvey, Kim M. (Kim Martin) (2012) New approaches and applications in electrochemical scanning probe microscopy. PhD thesis, University of Warwick.

Meadows, Katherine E. (2013) New approaches to the study of biophysicochemical processes. PhD thesis, University of Warwick.

Messin, Liam J. (2017) Spatial control of microtubule shrinkage. PhD thesis, University of Warwick.

Morris, Andrew John (1997) Representing spatial interactions in simple ecological models. PhD thesis, University of Warwick.

Morris, Nathan (Nathan Z.) (2000) Molecular detection of type II polyketide synthase genes in Cuban soils. PhD thesis, University of Warwick.

Mulakkal, Nitha Charles (2016) Molecular mechanisms of selective autophagy in Drosophila melanogaster. PhD thesis, University of Warwick.

Naylor, Richard William (2009) An investigation into how the cell cycle and the Notch signalling pathway regulate pronephrogenesis in Xenopus laevis. PhD thesis, University of Warwick.

Nelis, Stuart (2014) An investigation into the role and mechanism of action of small ubiquitin-like modifier interacting motifs in Arabidopsis thaliana proteins. PhD thesis, University of Warwick.

Page, Ashley M. (2017) Multifunctional scanning ion conductance microscopy. PhD thesis, University of Warwick.

Patel, Vibhuti J. (2009) Novel mass spectrometry-based approaches for the characterisation of systems of biological interest. PhD thesis, University of Warwick.

Peet, Daniel R. (2015) Mechanical inhibition of microtubule depolymerisation by kinesin. PhD thesis, University of Warwick.

Powell, Hayley Victoria (2009) Development and application of evanescent wave cavity ring-down spectroscopy as a probe of biologically relevant interfaces. PhD thesis, University of Warwick.

Prayogo, Cahyo (2013) Carbon storage and sequestration under different land uses with a focus on biomass crops. PhD thesis, University of Warwick.

Pritchard, Jane (1999) Analysis of drongo, a new Drosophila zinc finger gene expressed during oogenesis and neurogenesis. PhD thesis, University of Warwick.

Rana, Anas A. (2014) Stochastic models for cell populations undergoing transitions. PhD thesis, University of Warwick.

Richardson, Kathryn (2014) Mechanisms of GPCR signal regulation in fission yeast. PhD thesis, University of Warwick.

Robertson, Fiona E. (1996) Starvation-survival in Escherichia coli. PhD thesis, University of Warwick.

Rostain, William (2017) Engineering of RNA sensors and actuators in living cells. PhD thesis, University of Warwick.

Seniya, Chandrabhan (2018) A flexible low-cost quantitative phase imaging microscopy system for label-free imaging of multi-cellular biological samples. PhD thesis, University of Warwick.

Seveno, Nadine Antoinette (2000) Phenazine antibiotic production in liquid culture, on surface agar, and on plant roots by Pseudomonas aureofaciens PGS12. PhD thesis, University of Warwick.

Shaili, Evyenia (2013) Photoactivatable platinum (IV) anticancer complexes. PhD thesis, University of Warwick.

Shepperd, Lindsey A. (2013) Role and regulation of the kinetochore protein Spc7 in fission yeast mitosis. PhD thesis, University of Warwick.

Siamantouras, Eleftherios (2014) Nanomechanical investigation of soft biological cell adhesion using atomic force microscopy. PhD thesis, University of Warwick.

Simmons, Susan (2001) The microbial ecology of acidic environments. PhD thesis, University of Warwick.

Skipton, Michael D. (1974) Studies on the yeasts Saccharomyces cerevisiae and Saccharomycopsis lipolytica. PhD thesis, University of Warwick.

Slade, Susan E. (2013) Application of label-free mass spectrometry-based proteomics to biomarker discovery. PhD thesis, University of Warwick.

Slator, Paddy J. (2015) Characterising cell membrane heterogeneity through analysis of particle trajectories. PhD thesis, University of Warwick.

Stratton, Rebecca Claire (2008) Rapid effects of 17β-estradiol on hepatocytes. PhD thesis, University of Warwick.

Taylor, C. R. (Charles R.) (2013) Isolation of environmental lignin-degrading bacteria and identification of extracellular enzymes. PhD thesis, University of Warwick.

Thompson, Andrew Sydney (1995) The microbial oxidation of methanesulfonic acid in the marine environment. PhD thesis, University of Warwick.

Tibbles, Katherine L. (2013) Regulation of Clb1 during meiosis in saccharomyces cerevisiae. PhD thesis, University of Warwick.

Tusco, Radu (2017) Molecular mechanisms of selective autophagy in innate immunity. PhD thesis, University of Warwick.

Tyson, R. A. (Richard Anthony) (2011) The cartography of cell motion. PhD thesis, University of Warwick.

Tételin, Stéphanie (2008) An analysis of wnt signalling molecules in Xenopus pronephros development. PhD thesis, University of Warwick.

Walker, Kelly L. (2013) Molecular characterisation of PDIp : the pancreas-specific isoform of PDI. PhD thesis, University of Warwick.

Whitworth, David E. (1999) Feedback and molecular interactions in the process of light-induced carotenogenesis in Myxococcus xanthus. PhD thesis, University of Warwick.

Widman, Elizabeth (2012) Trait similarity vs species similarity in coral reef ecology : test of improved monitoring methods using Southwest Madagascar reefs. PhD thesis, University of Warwick.

Williams, Simon (2013) Microbial ecology of anammox bacteria in estuarine and oxygen minimum zone environments. PhD thesis, University of Warwick.

Wright, Harry (2003) Monogamy in the bat-eared fox, Otocyon megalotis. PhD thesis, University of Warwick.

Xu, Yuanwei (2016) Advances in Monte Carlo techniques with application to lattice protein aggregation. PhD thesis, University of Warwick.

Yool, Andrew (1997) The dynamics of open-ocean plankton ecosystem models. PhD thesis, University of Warwick.

Yu, Tung Fai (2014) Musculo-skeletal modelling and parameterisation in vivo. PhD thesis, University of Warwick.

Zou, Cunlu (2010) Applications of Granger causality to biological data. PhD thesis, University of Warwick.

Dataset

Chapman, Lloyd A. C. (2017) Data for Policy recommendations from transmission modelling for the elimination of visceral leishmaniasis in the Indian subcontinent. [Dataset]

Collier, Sharon, Paschke, Peggy, Kay, Robert R. and Bretschneider, Till (2017) Data for Image based modeling of bleb site selection. [Dataset]

Hasan, Muhammad, Fayter, Alice E. R. and Gibson, Matthew I. (2018) Data for Ice recrystallization inhibiting polymers enable glycerol-free cryopreservation of microorganisms. [Dataset]