Journal Article

Abrams, William R., Madsen, Jens, Gaiha, Gaurav D., Palaniyar, Nades, Dong, Tao, Mitchell, Daniel Anthony and Clark, Howard W.. (2013) Surfactant protein D modulates HIV infection of both T-cells and dendritic cells. PLoS One, Volume 8 (Number 3). Article no. e59047. ISSN 1932-6203

Achtman, Mark. (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. ISSN 1553-7390

Al-Lehyani, Ibrahim H., Grime, John M. A., Bano, Matthew, McKelvey, Kim and Allen, M. P. . (2013) Coarse-grained simulation of transmembrane peptides in the gel phase. Journal of Computational Physics, Volume 238 . pp. 97-105. ISSN 0021-9991

Amin, Munia, Porter, Steven L. and Soyer, Orkun S.. (2013) Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks. PLoS Computational Biology, Volume 9 (Number 3). Article no. e1002949. ISSN 1553-7358

Amin, Nader T., Wallis, A. Katrine, Wells, Stephen A., Rowe, Michelle L., Williamson, Richard A., Howard, Mark J. and Freedman, R. B.. (2013) High-resolution NMR studies of structure and dynamics of human ERp27 indicate extensive interdomain flexibility. Biochemical Journal, Volume 450 (Number 2). pp. 321-332. ISSN 0264-6021

Armond, Jonathan W., Saha, Krishanu, Rana, Anas A., Oates, Chris J., Jaenisch, Rudolf, Nicodemi, Mario and Mukherjee, Sach. (2014) A stochastic model dissects cell states in biological transition processes. Scientific Reports, Volume 4 . Article number 3692. ISSN 2045-2322

Arnoldt, Hinrich, Timme, Marc and Grosskinsky, Stefan. (2012) Frequency-dependent fitness induces multistability in coevolutionary dynamics. Journal of The Royal Society Interface, Vol.9 (No.77). pp. 3387-3396. ISSN 1742-5689

Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf and Blindauer, Claudia A.. (2012) Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, Volume 3 . Article number 142. ISSN 1664-302X

Barnett, James P., Dr., Blindauer, Claudia A., Kassaar, Omar, Khazaipoul, Siavash, Martin, Esther M., Sadler, P. J. and Stewart, Alan J. S.. (2013) Allosteric modulation of zinc speciation by fatty acids. Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 830 (Number 12). ISSN 0304-4165

Baronchelli, Andrea, Chater, Nick, Christiansen, Morten H. and Pastor-Satorras, R. (Romualdo), 1967-. (2013) Evolution in a changing environment. PLoS ONE, Vol.8 (No.1). e52742. ISSN 1932-6203

Baronchelli, Andrea, Chater, Nick, Pastor-Satorras, R. (Romualdo), 1967- and Christiansen, Morten H.. (2012) The biological origin of linguistic diversity. PLoS One, Vol.7 (No.10). e48029. ISSN 1932-6203

Berg, Hugo van den, 1968-, Ladell, Kristin, Miners, Kelly, Laugel, Bruno, Llewellyn-Lacey, Sian, Clement, Mathew, Cole, David K., Gostick, Emma, Wooldridge, L. (Linda), Sewell, Andrew K., Bridgeman, John S. and Price, D. A. (David A.). (2013) Cellular-level versus receptor-level response threshold hierarchies in T-Cell activation. Frontiers in Immunology, Volume 4 . Article number 200. ISSN 1664-3224

Bila, J., Mortensen, C. N., Andresen, M., Vicente, Joana G. and Wulff, E. G.. (2013) Xanthomonas campestris pv. campestris race 1 is the main causal agent of black rot of Brassicas in Southern Mozambique. African Journal of Biotechnology, Volume 12 (Number 6). pp. 602-610. ISSN 1684-5315

Bingle, Lewis E. H., Constantinidou, Chrystala, Shaw, Robert K., Islam, Md. Shahidul, 1956-, Patel, Mala, Snyder, Lori A. S., Lee, David J., Penn, C. W., Busby, Stephen J. W. and Pallen, Mark J.. (2014) Microarray analysis of the ler regulon in enteropathogenic and enterohaemorrhagic escherichia coli strains. PLoS One, Volume 9 (Number 1). Article number e80160. ISSN 1932-6203

Blanc-Mathieu, Romain, 1987-, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves , Carré, Isabelle A., Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, 1974-, Piégu, Benoit, Rivals, Eric , Schackwitz, Wendy, Peer, Yves van de and Piganeau, Gwenaël, 1974-. (2014) An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics, Volume 15 . pp. 1-11. Article number 1103. ISSN 1471-2164

Bland, C., Hartmann, E. M., Christie-Oleza, Joseph Alexander, Fernandez, Bernard and Armengaud, J.. (2014) N-Terminal-oriented proteogenomics of the marine bacterium Roseobacter Denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography. Molecular & Cellular Proteomics, Volume 13 (Number 5). pp. 1369-1381. ISSN 1535-9476

. (2014) Uterine selection of human embryos at implantation. Scientific Reports, Volume 4 . Article number 3894. ISSN 2045-2322

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, 1956-, Moore, Jonathan D. and Ott, Sascha. (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . ISSN 1367-4803

Bräutigam, Katharina, Vining, Kelly J., Lafon-Placette, Clément, Fossdal, Carl G., Mirouze, Marie, Jose, Gutiérrez-Marcos, Fluch, Silvia, Fraga, Mario Fernández, Guevara, M. Ángeles, Abarca, Dolores, Johnsen, Øystein, Maury, Stéphane, Strauss, Steven H., 1955-, Campbell, Malcolm M., Rohde, Antje, Díaz-Sala, Carmen and Cervera, María-Teresa. (2013) Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, Volume 3 (Number 2). pp. 399-415. ISSN 2045-7758

Bugg, Timothy D. H.. (2012) Biosynthesis : imaging cell-wall biosynthesis live. Nature Chemistry, Vol.5 (No.1). pp. 10-12. ISSN 1755-4330

Busi, R. (Roberto), Neve, P. (Paul) and Powles, Stephen B.. (2013) Evolved polygenic herbicide resistance in Lolium rigidum by low-dose herbicide selection within standing genetic variation. Evolutionary Applications, Volume 6 (Number 2). pp. 231-242. ISSN 1752-4571

Busi, Roberto, Vila-Aiub, Martin M., Beckie, Hugh John, 1961-, Gaines, Todd A., Goggin, Danica E., Kaundun, Shiv S., Lacoste, Myrtille, Neve, Paul, Nissen, Scott Jay, Norsworthy, Jason K., Renton, M. (Michael), Shaner, Dale L. (Dale Lester), Tranel, Patrick J., Wright, Terry R., 1969-, Yu, Qin and Powles, Stephen B.. (2013) Herbicide-resistant weeds : from research and knowledge to future needs. Evolutionary Applications . ISSN 1752-4571 (In Press)

Carbonero, Franck, Oakley, Brian B. and Purdy, Kevin J.. (2014) Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One, Volume 9 (Number 1). Article number e85105. ISSN 1932-6203

Carrera, Javier and Jaramillo, Alfonso. (2013) Automated design of bacterial genome sequences. BMC Systems Biology, Volume 7 (Number 1). Article number 108. ISSN 1752-0509

Carslake, David, Grant, Wyn, Green, Laura E., Cave, Jonathan A. K., 1951-, Greaves, Justin, Keeling, Matthew James, McEldowney, John F., Weldegebriel, Habtu Tadesse and Medley, Graham. (2011) Endemic cattle diseases : comparative epidemiology and governance. Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol.366 (No.1573). pp. 1975-1986. ISSN 1471-2970

Carslake, David, Townley, Stuart and Hodgson, David J.. (2009) Patterns and rules for sensitivity and elasticity in population projection matrices. Ecology, Vol.90 (No.11). pp. 3258-3267. ISSN 0012-9658

Carter, Anthony D., Bonyadi, Roxanna and Gifford, Miriam L.. (2013) The use of fluorescence-activated cell sorting in studying plant development and environmental responses. The International Journal of Developmental Biology, Volume 57 . pp. 545-552. ISSN 0214-6282

Castro, Thiago L. P., Seyffert, Nubia, Ramos, Rommel T. J., Barbosa, Silvanira, Carvalho, Rodrigo D. O., Pinto, Anne Cybelle, Carneiro, Adriana Ribeiro, Silva, Wanderson Marques, Pacheco, Luis G. C., Downson, Christopher G., Schneider, Maria P. C., Miyoshi, Anderson, Azevedo, V. (Vasco) and Silva, Artur. (2013) Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method. Microbial Biotechnology, Volume 6 (Number 2). pp. 168-177. ISSN 1751-7907

Caudron, Quentin, Donnelly, Simon R., Brand, Samuel P. C. and Timofeeva, Yulia. (2012) Computational convergence of the path integral for real dendritic morphologies. The Journal of Mathematical Neuroscience, Volume 2 (Number 1). ISSN 2190-8567

Chan, Jacqueline, Halachev, Mihail R., Loman, Nicholas J., Constantinidou, Chrystala and Pallen, Mark J.. (2012) Defining bacterial species in the genomic era : insights from the genus Acinetobacter. BMC Microbiology, Volume 12 (Number 1). Article number 302. ISSN 1471-2180

Chen, Li I., Sooranna, Suren R., Lei, Kaiyu, Kandola, Mandeep, Bennett, Phillip, Liang, Zhiqing, Grammatopoulos, Dimitris K. and Johnson, Mark R.. (2012) Cyclic AMP increases COX-2 expression via mitogen-activated kinase in human myometrial cells. Journal of Cellular and Molecular Medicine, Volume 16 (Number 7). pp. 1447-1460. ISSN 15821838

Christie-Oleza, Joseph Alexander and Armengaud, Jean. (2010) In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry : the Ruegeria pomeroyi DSS-3 case-study. Marine Drugs, Volume 8 (Number 8). pp. 2223-2239. ISSN 1660-3397

Clarke, Andrew C., Prost, Stefan, Stanton, Jo-Ann L., White, W Timothy J., Kaplan, Matthew E. and Matisoo-Smith, Lisa (2014) From cheek swabs to consensus sequences : an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes. BMC Genomics, Volume 15 (Number 1). Article number 68. ISSN 1471-2164

Click, Arielle, Savaliya, Chandni H, Kienle, Simone, Herrmann, Matthias and Pires-da Silva, Andre. (2009) Natural variation of outcrossing in the hermaphroditic nematode Pristionchus pacificus. BMC Evolutionary Biology, Volume 9 (Number 1). Article no.75. ISSN 1471-2148

Constantinidou, Chrystala, Sergeant, Martin J., Cogan, Tristan, Penn, Charles W. and Pallen, Mark J.. (2012) High-throughput sequencing of 16S rRNA gene amplicons : effects of extraction procedure, primer length and annealing temperature. PLoS One, Volume 7 (Number 5). Article number e38094. ISSN 1932-6203

Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Woodcock, Ailidh, Swarup, Ranjan, Galbiati, Massimo, Tonelli, Chiara, 1951-, Napier, Richard M. , Hedden, Peter, Bennett, Malcolm J. and Sadanandom, Ari. (2014) Small ubiquitin-like modifier protein, SUMO enables plants to control growth independently of the phytohormone gibberellin. Developmental Cell, Volume 28 (Number 1). pp. 102-110. ISSN 1534-5807

Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis and Rand, D. A. (David A.). (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. ISSN 1465-4644

Daniels, D. Robert and Turner, Matthew S. . (2013) Islands of conformational stability for Filopodia. PLoS One, Volume 8 (Number 3). Article no. e59010. ISSN 1932-6203

Datta, Samik, Bull, James C., Budge, Giles E. and Keeling, Matthew James. (2013) Modelling the spread of American foulbrood in honeybees. Journal of The Royal Society Interface, Volume 10 (Number 88). Article number 20130650. ISSN 1742-5689

Davies, Lawrence O., Schäfer, Hendrik, Marshall, Samantha, Bramke, Irene, Oliver, Robin G. and Bending, Gary D.. (2013) Light structures phototroph, bacterial and fungal communities at the soil surface. PLoS One, Volume 8 (Number 7). Article number e69048. ISSN 1932-6203

Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris (Researcher in Genetics and Genomics), McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter, 1959-. (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. ISSN 1553-7390

Dilly, Suzanne J., Beecham, Matthew P., Brown, Steven P., Griffin, John M., Clark, Andrew J., Griffin, Craig D., Marshall, Jacqueline, Napier, Richard M. , Taylor, Paul C. and Marsh, Andrew. (2006) Novel tertiary amine oxide surfaces that resist non-specific protein adsorption. Langmuir, Vol.22 (No.19). pp. 8144-8150. ISSN 1520-5827

Dow, Claire E., Rodger, Alison, Roper, David I. and Berg, Hugo van den, 1968-. (2013) A model of membrane contraction predicting initiation and completion of bacterial cell division. Integrative Biology (Number 5). pp. 778-795. ISSN 1757-9694

Dowler, Elizabeth, 1951-. (2012) Philip Reid Payne, Professor of Nutrition, London School of Hygiene and Tropical Medicine (30 July 1928–9 January 2012). Proceedings of the Nutrition Society, Volume 71 (Number 4). pp. 639-640. ISSN 0029-6651

Dowling, Andrea J., Wilkinson, Paul A., Holden, Matthew T. G., Quail, Michael A., Bentley, Stephen D., Reger, Julia, Waterfield, Nicholas R., Titball, Richard W. and ffrench-Constant, Richard H.. (2010) Genome-wide analysis reveals loci encoding anti-macrophage factors in the human pathogen burkholderia pseudomallei K96243. PLoS One, Volume 5 (Number 12). Article number e15693. ISSN 1932-6203

Drechsler, Hauke and McAinsh, Andrew D.. (2012) Exotic mitotic mechanisms. Open Biology, Vol.2 . Article number 120140. ISSN 2046-2441

Du, Cheng-Jin, Hawkins, Phillip T., Stephens, Len R. and Bretschneider, Till. (2013) 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics, Volume 14 (Number 1). Article number 296. ISSN 1471-2105

. (2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. ISSN 0967-3849

Eichmann, Ruth and Schäfer, P. (Patrick). (2012) The endoplasmic reticulum in plant immunity and cell death. Frontiers in Plant Science, Volume 3 . Article number 200. ISSN 1664-462X

Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David and Bohlmann, Holger. (2013) The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiology and Biochemistry, Volume 70 . pp. 379-386. ISSN 0981-9428

Elliott, Charles M., Stinner, Björn and Venkataraman, Chandrasekhar. (2012) Modelling cell motility and chemotaxis with evolving surface finite elements. Journal of The Royal Society Interface, Volume 9 (Number 76). pp. 3027-3044. ISSN 1742-5689

. (2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. ISSN 1944-3277

Eskat, Anja, Deng, Wen, Hofmeister, Antje, Rudolphi, Sven, Emmerth, Stephan, Hellwig, Daniela, Ulbricht, Tobias, Döring, Volker, 1952-, Bancroft, James M., McAinsh, Andrew D., Cardoso, M. Cristina, Meraldi, Patrick, Hoischen, Christian, Leonhardt, Heinrich and Diekmann, Stephan. (2012) Step-wise assembly, maturation and dynamic behavior of the human CENP-P/O/R/Q/U kinetochore sub-complex. PLoS One, Vol.7 (No.9). e44717. ISSN 1932-6203

Fabre, Laëtitia, Zhang, Jian, Guigon, Ghislaine, Le Hello, Simon, Guibert, Véronique, Accou-Demartin, Marie, de Romans, Saïana, Lim, Catherine, Roux, Chrystelle, Passet, Virginie, Diancourt, Laure, Guibourdenche, Martine, Issenhuth-Jeanjean, Sylvie, Achtman, Mark, Brisse, Sylvain, Sola, Christophe and Weill, François-Xavier. (2012) CRISPR typing and subtyping for improved laboratory surveillance of salmonella infections. PLoS One, Volume 7 (Number 5). Article number e36995. ISSN 1932-6203

Feeney, Mistianne, Frigerio, Lorenzo, Kohalmi, Susanne E., Cui, Yuhai and Menassa, Rima. (2013) Reprogramming cells to study vacuolar development. Frontiers in Plant Science, Volume 4 . Article number 493. ISSN 1664-462X

Firczuk, Helena, Kannambath, Shichina, Pahle, Jürgen, Claydon, Amy J., Beynon, R. J. (Robert J.), Duncan, John, Westerhoff, Hans, Mendes, Pedro and McCarthy, John E. G.. (2013) An in vivo control map for the eukaryotic mRNA translation machinery. Molecular Systems Biology, Vol.9 . p. 635. ISSN 1744-4292

Font-Burgada, Joan, Reina, Oscar, Rossell, David and Azorin, Fernando. (2013) chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome. Nucleic Acids Research . ISSN 0305-1048 (In Press)

Footitt, Steven, Huang, Ziyue, Clay, Heather A., Mead, A. (Andrew) and Finch-Savage, William E.. (2013) Temperature, light and nitrate sensing coordinate Arabidopsis seed dormancy cycling resulting in winter and summer annual phenotypes. Plant Journal, Volume 74 (Number 6). pp. 1003-1015. ISSN 0960-7412

Forrest, Michael D.. (2013) Mathematical model of bursting in dissociated Purkinje neurons. PLoS One, Volume 8 (Number 8). e68765. ISSN 1932-6203

Forrest, Michael D., Wall, Mark J., Press, Daniel A. and Feng, Jianfeng. (2012) The sodium-potassium pump controls the intrinsic firing of the cerebellar Purkinje neuron. PLoS ONE, Vol.7 (No.12). e51169. ISSN 1932-6203

Freedman, R. B.. (2009) A non-catalytic disulphide bond regulating redox flux in the ER oxidative folding pathway. EMBO Journal, Vol.28 . pp. 169-170. ISSN 0261-4189

Fuchs, Evelyn, Hass, Alexander K., Spooner, Robert A. , Yoshimura, Shin-ichiro , Lord, Mike (J. Mike) and Barr, Francis A.. (2007) Specific Rab GTPase-activating proteins define the Shiga toxin and epidermal growth factor uptake pathways. Journal of Cell Biology, Vol.177 (No.6). pp. 1133-1143. ISSN 0021-9525

Ge, Tian, Kendrick, Keith M. and Feng, Jianfeng. (2009) A novel extended Granger Causal model approach demonstrates brain hemispheric differences during face recognition learning. PL o S Computational Biology, Vol.5 (No.11). ISSN 1553-734X

Gerc, Amy J., Song, Lijiang, Challis, Gregory L., Stanley-Wall, Nicola R. and Coulthurst, Sarah J.. (2012) The insect pathogen Serratia marcescens Db10 uses a hybrid non-ribosomal peptide synthetase-polyketide synthase to produce the antibiotic althiomycin. PLoS One, Vol.7 (No.9). e44673. ISSN 1932-6203

Ghafari , Fataneh, Gutierrez , Carlos G. and Hartshorne, Geraldine M.. (2007) Apoptosis in mouse fetal and neonatal oocytes during meiotic prophase one. BMC Development Biology, Vol.7 . p. 87. ISSN 1471-213x

. (2014) Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Molecular Cell, Volume 53 (Number 3). pp. 369-379. ISSN 1097-2765 (In Press)

Gifford, M. L., Banta, Joshua A., Katari, Manpreet S., Hulsmans, Jo, Chen, Lisa, Ristova, Daniela, Tranchina, Daniel, Purugganan, Michael D., Coruzzi, Gloria, Birnbaum, Kenneth D., Rosas, Ulises and Cibrian-Jaramillo, Angelica. (2013) Plasticity regulators modulate specific root traits in discrete nitrogen environments. PLoS Genetics, Volume 9 (Number 9). Article number e1003760. ISSN 1553-7390

Gomes, M. Gabriela M., Lipsitch, Marc, Wargo, Andrew R., Kurath, Gael, Rebelo, Carlota, Medley, Graham and Coutinho, Antonio. (2014) A missing dimension in measures of vaccination impacts. PLoS Pathogens, Volume 10 (Number 3). Article number e1003849. ISSN 1553-7374

Gosling, Paul, Mead, A. (Andrew), Proctor, Maude, Hammond, John P. and Bending, G. D. (Gary D.). (2013) Contrasting arbuscular mycorrhizal communities colonizing different host plants show a similar response to a soil phosphorus concentration gradient. New Phytologist, Volume 198 (Number 2). pp. 546-556. ISSN 0028-646X

Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W.. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. ISSN 1744-4292

Gould, Phillip S., Dyer, Nigel P., Croft, Wayne D., Ott, Sascha and Easton, A. J. (Andrew J.). (2014) Cellular mRNAs access second ORFs using a novel amino acid sequence-dependent coupled translation termination-reinitiation mechanism. RNA . ISSN 1355-8382 (In Press)

Grandjean, Thomas R. B., Chappell, Michael J., Yates, James W. T. and Evans, N. D.. (2013) Structural identifiability analyses of candidate models for in vitro Pitavastatin hepatic uptake. Computer Methods and Programs in Biomedicine . ISSN 0169-2607 (In Press)

Greaves, Justin and Grant, Wyn. (2010) Crossing the interdisciplinary divide : political science and biological science. Political Studies, Vol.58 (No.2). pp. 320-339. ISSN 0032-3217

Guo, Shuixia, Wu, Jianhua, Ding, Mingzhou and Feng, Jianfeng. (2008) Uncovering interactions in the frequency domain. P L o S Computational Biology , Vol.4 (No.5). ISSN 1553-734X

Gómez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J. and Zubkov, Mikhail V.. (2013) Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3). pp. 603-614. ISSN 1751-7362

Hadjipantelis, Pantelis-Zenon, Jones, Nick S., Moriarty, John M., Springate, David A. and Knight, C. G. (Christopher G.). (2013) Function-valued traits in evolution. Journal of The Royal Society Interface, Volume 10 (Number 82). Article: 20121032. ISSN 1742-5689

Halachev, Mihail R., Loman, Nicholas J. and Pallen, Mark J.. (2011) Calculating orthologs in bacteria and archaea : a divide and conquer approach. PLoS One, Volume 6 (Number 12). Article number e28388. ISSN 1932-6203

Hattersley, J. G. (John G.), Pérez-Velázquez, J., Chappell, M. J. (Michael J.), Bearup, Daniel James, Roper, David I., Dowson, Christopher G., Bugg, Tim and Evans, N. D.. (2011) Indistinguishability and identifiability of kinetic models for the MurC reaction in peptidoglycan biosynthesis. Computer Methods and Programs in Biomedicine, Vol.104 (No.2). pp. 70-80. ISSN 01692607

Hearn, Jessica M., Romero-Canelón, Isolda, Qamar, Bushra, Liu, Zhe (Researcher in chemistry), Hands-Portman, Ian and Sadler, P. J.. (2013) Organometallic iridium(III) anticancer complexes with new mechanisms of action: NCI-60 screening, mitochondrial targeting, and apoptosis. ACS Chemical Biology, Volume 8 (Number 6). pp. 1335-1343. ISSN 1554-8929

Hickman, Richard J., Hill, C. (Claire), Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, 1956-, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky. (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. ISSN 0960-7412

Higgins, Helen, Green, Laura E., Green, Martin (Martin J.) and Kaler, Jasmeet. (2013) How does reviewing the evidence change veterinary surgeons' beliefs regarding the treatment of ovine footrot? A quantitative and qualitative study. PLoS One, Volume 8 (Number 5). Article number e64175. ISSN 1932-6203

Hills, Claire E., Kerr, Michael I., Wall, M. (Mark) and Squires, Paul E.. (2013) Visfatin reduces gap junction mediated cell-to-cell communication in proximal tubule-derived epithelial cells. Cellular Physiology & Biochemistry, Volume 32 (Number 5). pp. 1200-1212. ISSN 1015-8987

Hilton, Sally, Bennett, Amanda J., Keane, Gary, Bending, G. D. (Gary D.), Chandler, David, Stobart, Ron and Mills, Peter R. (Peter Richard). (2013) Impact of shortened crop rotation of oilseed rape on soil and rhizosphere microbial diversity in relation to yield decline. PLoS One, Volume 8 (Number 4). e59859. ISSN 1932-6203

Hodgkin, M. N., Hills, Claire E. and Squires, Paul E.. (2008) The calcium-sensing receptor and insulin secretion : a role outside systemic control 15 years on. Journal of Endocrinology, Vol.199 (No.1-4). ISSN 0022-0795

Hollingsworth, T. Déirdre, Laeyendecker, Oliver, Shirreff, George, Donnelly, Christl A., Serwadda, David, Wawer, Maria, Kiwanuka, Noah, Nalugoda, Fred, Collinson-Streng, Aleisha, Ssempijja, Victor, Hanage, William P., Quinn, Thomas C., Gray, Ronald H. and Fraser, Christophe. (2010) HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda. PLoS Pathogens, Volume 6 (Number 5). Article no. e1000876. ISSN 1553-7374

House, Thomas A.. (2014) Epidemiological dynamics of Ebola outbreaks. eLife, Volume 3 . ISSN 2050-084X

Humphreys, Ian R., Clement, Mathew, Marsden, Morgan, Ladell, Kristin, McLaren, James E., Smart, Kathryn, Hindley, James P., Bridgeman, Hayley M., Berg, Hugo van den, 1968-, Price, D. A. (David A.), Ager, Ann, Wooldridge, Linda, Godkin, Andrew and Gallimore, Awen M.. (2012) Avidity of influenza-specific memory CD8+ T-cell populations decays over time compromising antiviral immunity. European Journal of Immunology, Volume 42 (Number 12). pp. 3235-3242. ISSN 0014-2980

Iglesias, Caroline, Meunier, C. (Claude), Manuel, Marin, Timofeeva, Yulia, Delestrée, Nicholas and Zytnicki, D.. (2011) Mixed mode oscillations in mouse spinal motoneurons arise from a low excitability state. Journal of Neuroscience, Volume 31 (Number 15). pp. 5829-5840. ISSN 0270-6474

Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David, Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes and Borth, Nicole. (2013) CHO microRNA engineering is growing up : recent successes and future challenges. Biotechnology Advances, Volume 31 (Number 8). pp. 1501-1513. ISSN 0734-9750

Jenkins, Dafyd J., Finkenstädt, Bärbel and Rand, D. A. (David A.). (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. ISSN 1367-4803

Johnson, Samuel, Domínguez-García, Virginia, Donetti, Luca and Muñoz, Miguel A. (Miguel Angel Muñoz Martínez). (2014) Trophic coherence determines food-web stability. Proceedings of the National Academy of Sciences of the United States of America . Article number 201409077. ISSN 0027-8424 (In Press)

Kaseda, Kuniyoshi, McAinsh, Andrew D. and Cross, R. A.. (2012) Dual pathway spindle assembly increases both the speed and the fidelity of mitosis. Biology Open, Vol.1 (No.1). pp. 12-18. ISSN 2046-6390

Kaverina, Irina and Straube, Anne. (2011) Regulation of cell migration by dynamic microtubules. Seminars in Cell & Developmental Biology, Volume 22 (Number 9). pp. 968-974. ISSN 1084-9521

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Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.). (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. ISSN 1367-4803

Woolley, Michael J., Watkins, Harriet A., Taddese, Bruck, Karakullukcu, Z. Gamze, Barwell, James, Smith, Kevin J., Hay, Debbie L., Poyner, David, Reynolds, Christopher A. and Conner, Alex C.. (2013) The role of ECL2 in CGRP receptor activation : a combined modelling and experimental approach. Journal of The Royal Society Interface, Volume 10 (Number 88). p. 20130589. ISSN 1742-5689

Yang, Bu, Peng, Guangda, Li, Tianbang and Kadowaki, Tatsuhiko. (2013) Molecular and phylogenetic characterization of honey bee viruses, Nosema microsporidia, protozoan parasites, and parasitic mites in China. Ecology and Evolution, Volume 3 (Number 2). pp. 298-311. ISSN 2045-7758

Yang, Guowei and Waterfield, Nicholas R.. (2013) The role of TcdB and TccC subunits in secretion of the photorhabdus Tcd toxin complex. PLoS Pathogens, Volume 9 (Number 10). Article number e1003644. ISSN 1553-7374

Yao, Y., Lu, W. L., Xu, B., Li, C. B., Lin, C. P., Waxman, D. (David) and Feng, Jianfeng. (2013) The increase of the functional entropy of the human brain with age. Scientific Reports, Volume 3 . Article number 2853. ISSN 2045-2322

Zhou, Zhemin, McCann, Angela, Litrup, Eva, Murphy, Ronan, Cormican, Martin, Fanning, Seamus, Brown, Derek, Guttman, David S., Brisse, Sylvain and Achtman, Mark. (2013) Neutral genomic microevolution of a recently emerged pathogen, salmonella enterica serovar agona. PLoS Genetics, Volume 9 (Number 4). Article number e1003471. ISSN 1553-7390

Zou, Cunlu, Denby, Katherine J. and Feng, Jianfeng. (2009) Granger causality vs. dynamic Bayesian network inference: a comparative study. BMC Bioinformatics, Vol.10 . Article number 122. ISSN 1471-2105

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Book Item

Valdes-Amaro, Daniel and Bhalerao, Abhir (2009) Unsupervised clustering using diffusion maps for local shape modelling. In: Moreno-Díaz, Roberto and Pichler, Franz, 1936- and Quesada-Arencibia, Alexis, (eds.) Computer Aided Systems Theory : EUROCAST 2009. Lecture Notes in Computer Science, Volume 5717 . Springer Berlin Heidelberg, pp. 342-349. ISBN 9783642047718

Conference Item

Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten and Nattkemper, Tim W. (2011) TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology pp. 1-5.

Tindjong, Rodrigue, Kaufman, Igor, Luchinsky, Dmitrii G., McClintock, P. V. E., Khovanov, I. A. and Eisenberg, Robert S. (2013) Stochastic dynamics of remote knock-on permeation in biological ion channels. In: 22nd International Conference on Noise and Fluctuations (ICNF), Montpellier, France, 24-28 June 2013. Published in: Noise and Fluctuations (ICNF), 2013 22nd International Conference on pp. 1-4.

Journal Item

Arasaradnam, Ramesh P. and Nwokolo, Chuka U. (2012) Epiphenomenon of telomere lengths : lessons from ulcerative colitis. Gut, Vol.61 (No.10). p. 1516. ISSN 0017-5749

Liu, Kuo-Kang, Wu, Ren-Guei, Chuang, Yun-Ju, Khoo, Hwa Seng, Huang, Shih-Hao and Tseng, Fan-Gang (2010) Microfluidic systems for biosensing. Sensors, Vol.10 (No.7). pp. 6623-6661. ISSN 1424-8220

Nezis, I. P., Vaccaro, Maria I., Devenish, Rodney J. and Juhász, Gábor (2014) Autophagy in development, cell differentiation, and homeodynamics: from molecular mechanisms to diseases and pathophysiology. BioMed Research International, Volume 2014 . pp. 1-2. Article number 349623. ISSN 2314-6133

Submitted Journal Article

(2010) The Scottish Structural Proteomics Facility : targets, methods and outputs. Journal of Structural and Functional Genomics, Vol.11 (No.2). pp. 167-180. ISSN 1345-711X

Report

Craig, Iain D. and Wilson, David H. (1987) CONFER : a knowledge system for bio-process control. University of Warwick. Department of Computer Science. (Department of Computer Science research report). (Unpublished)

Thesis or Dissertation

Ahmed, Usman (Researcher in medical science) (2013) Protein damage markers in diagnosis, progression and treatment of arthritis. PhD thesis, University of Warwick.

Arifin, Khaizurin T. (2013) Creating an orthogonal signalling pathway in S. cerevisiae. PhD thesis, University of Warwick.

Arnab, Sylvester (2009) Soft volume simulation using a deformable surface model. PhD thesis, University of Warwick.

Baird, Mark E. (1999) Towards a verified mechanistic model of plankton population dynamics. PhD thesis, University of Warwick.

Baker, Paul (Researcher in biological sciences) (1997) The distribution and diversity of actinomycetes in soil fractions. PhD thesis, University of Warwick.

Barker, Zoe Elizabeth (2007) Epidemiology of lameness in dairy cows. PhD thesis, University of Warwick.

Barr, John Nicholas, 1965- (1993) Expression of the nucleoprotein and phosphoprotein genes of pneumonia virus of mice and specific interactions of the gene products. PhD thesis, University of Warwick.

Basu, Balaka Piku (2000) The particulate methane monooxygenase from Methylococcus capsulatus (Bath). PhD thesis, University of Warwick.

Bickerton, Erica Jane (2010) Cellular tropism and cell-to-cell fusion properties of the infectious bronchitis virus spike glycoprotein. PhD thesis, University of Warwick.

Bouchekhima, Abdnacer (2009) Quantification of the plant endoplasmic reticulum. PhD thesis, University of Warwick.

Brown, Richard Henry, 1944- (1969) A study of the cell envelope of Halobacterium salinarium. PhD thesis, University of Warwick.

Callaghan, Anastasia J. (2000) The regulatory protein and component interactions of soluble methane monooxygenase. PhD thesis, University of Warwick.

Carvalho, Maria Suzana Balparda de, 1947- (1983) Dynamical systems and games theory. PhD thesis, University of Warwick.

Christian, Nigel David (2007) From biopiracy to bioprospecting: an historical sociology of the search for biological resources. PhD thesis, University of Warwick.

Clarke, Ian Nicholas, 1957- (1982) Genomic variation in rotaviruses. PhD thesis, University of Warwick.

Das Choudhury, Sruti (2013) Uniscale and multiscale gait recognition in realistic scenario. PhD thesis, University of Warwick.

Davies, Siân Elizabeth Wynne (2013) Transcription factor interactions at the promoter of the Arabidopsis circadian clock gene LHY. PhD thesis, University of Warwick.

Di Maiuta, Nicola (2010) Characterisation of mixed microbial populations in white mineral dispersions. PhD thesis, University of Warwick.

Downey, Mike J. (2012) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PhD thesis, University of Warwick.

Essa, Sahar Sultan (2001) A study on the cell mediated immunity of human cytomegalovirus infection in kidney transplant recipients. PhD thesis, University of Warwick.

Hilton, Gillian R. (2009) Mass spectrometry-based studies of synthetic and natural macromolecules. PhD thesis, University of Warwick.

Holness, Claire Louise Lesley (1989) Isolation and characterisation of mutants of cowpea mosaic virus. PhD thesis, University of Warwick.

Jiménez Roldán, J. E. (José Emilio) (2012) Rigidity analysis of protein structures and rapid simulations of protein motion. PhD thesis, University of Warwick.

Kerr, Gary W. (2013) The role of protein phosphatase PP2ACdc55 during meiosis in Saccharomyces cerevisiae. PhD thesis, University of Warwick.

Kowalczyk, Agnieszka (2013) Role of microbial adaptation in the biodegradation of chemical pollutants : extrapolation from laboratory to rivers. PhD thesis, University of Warwick.

Lal, Suchita K. (2013) The role of corticotropin-releasing hormone (CRH) in cellular models of breast cancer. PhD thesis, University of Warwick.

Langmead, Olivia (2002) Coral community dynamics and disturbances : a modelling approach for Caribbean coral reefs. PhD thesis, University of Warwick.

Ling, Roger, 1962- (1988) Polypeptides of murine and avian pneumoviruses. PhD thesis, University of Warwick.

Lloyd, John S. (1997) Heterologous expression and site-directed mutagenesis of soluble methane monoxygenase. PhD thesis, University of Warwick.

Locke, James C. W. (2006) A systems biology approach to the Arabidopsis circadian clock. PhD thesis, University of Warwick.

Lowe, Lawrence, 1948- (1976) An investigation into the applications of real-time computing techniques in industrial audiometry. PhD thesis, University of Warwick.

Luo, Jamie X. (2012) Functionality and sensing in Boolean networks. PhD thesis, University of Warwick.

McKelvey, Kim M. (Kim Martin) (2012) New approaches and applications in electrochemical scanning probe microscopy. PhD thesis, University of Warwick.

Meadows, Katherine E. (2013) New approaches to the study of biophysicochemical processes. PhD thesis, University of Warwick.

Morris, Andrew John, 1970- (1997) Representing spatial interactions in simple ecological models. PhD thesis, University of Warwick.

Morris, Nathan (Nathan Z.) (2000) Molecular detection of type II polyketide synthase genes in Cuban soils. PhD thesis, University of Warwick.

Naylor, Richard William, 1983- (2009) An investigation into how the cell cycle and the Notch signalling pathway regulate pronephrogenesis in Xenopus laevis. PhD thesis, University of Warwick.

Patel, Vibhuti J. (2009) Novel mass spectrometry-based approaches for the characterisation of systems of biological interest. PhD thesis, University of Warwick.

Powell, Hayley Victoria (2009) Development and application of evanescent wave cavity ring-down spectroscopy as a probe of biologically relevant interfaces. PhD thesis, University of Warwick.

Prayogo, Cahyo (2013) Carbon storage and sequestration under different land uses with a focus on biomass crops. PhD thesis, University of Warwick.

Pritchard, Jane (1999) Analysis of drongo, a new Drosophila zinc finger gene expressed during oogenesis and neurogenesis. PhD thesis, University of Warwick.

Rana, Anas A. (2014) Stochastic models for cell populations undergoing transitions. PhD thesis, University of Warwick.

Richardson, Kathryn (2014) Mechanisms of GPCR signal regulation in fission yeast. PhD thesis, University of Warwick.

Robertson, Fiona E. (1996) Starvation-survival in Escherichia coli. PhD thesis, University of Warwick.

Seveno, Nadine Antoinette (2000) Phenazine antibiotic production in liquid culture, on surface agar, and on plant roots by Pseudomonas aureofaciens PGS12. PhD thesis, University of Warwick.

Shaili, Evyenia (2013) Photoactivatable platinum (IV) anticancer complexes. PhD thesis, University of Warwick.

Shepperd, Lindsey A. (2013) Role and regulation of the kinetochore protein Spc7 in fission yeast mitosis. PhD thesis, University of Warwick.

Siamantouras, Eleftherios (2014) Nanomechanical investigation of soft biological cell adhesion using atomic force microscopy. PhD thesis, University of Warwick.

Simmons, Susan, 1974- (2001) The microbial ecology of acidic environments. PhD thesis, University of Warwick.

Skipton, Michael D., 1950- (1974) Studies on the yeasts Saccharomyces cerevisiae and Saccharomycopsis lipolytica. PhD thesis, University of Warwick.

Slade, Susan E. (2013) Application of label-free mass spectrometry-based proteomics to biomarker discovery. PhD thesis, University of Warwick.

Stratton, Rebecca Claire (2008) Rapid effects of 17β-estradiol on hepatocytes. PhD thesis, University of Warwick.

Taylor, C. R. (Charles R.) (2013) Isolation of environmental lignin-degrading bacteria and identification of extracellular enzymes. PhD thesis, University of Warwick.

Thompson, Andrew Sydney, 1968- (1995) The microbial oxidation of methanesulfonic acid in the marine environment. PhD thesis, University of Warwick.

Tibbles, Katherine L. (2013) Regulation of Clb1 during meiosis in saccharomyces cerevisiae. PhD thesis, University of Warwick.

Tyson, R. A. (Richard Anthony) (2011) The cartography of cell motion. PhD thesis, University of Warwick.

Tételin, Stéphanie (2008) An analysis of wnt signalling molecules in Xenopus pronephros development. PhD thesis, University of Warwick.

Walker, Kelly L. (2013) Molecular characterisation of PDIp : the pancreas-specific isoform of PDI. PhD thesis, University of Warwick.

Whitworth, David E. (1999) Feedback and molecular interactions in the process of light-induced carotenogenesis in Myxococcus xanthus. PhD thesis, University of Warwick.

Widman, Elizabeth (2012) Trait similarity vs species similarity in coral reef ecology : test of improved monitoring methods using Southwest Madagascar reefs. PhD thesis, University of Warwick.

Williams, Simon (Researcher in life sciences) (2013) Microbial ecology of anammox bacteria in estuarine and oxygen minimum zone environments. PhD thesis, University of Warwick.

Wright, Harry, 1973- (2003) Monogamy in the bat-eared fox, Otocyon megalotis. PhD thesis, University of Warwick.

Yool, Andrew (1997) The dynamics of open-ocean plankton ecosystem models. PhD thesis, University of Warwick.

Yu, Tung Fai (2014) Musculo-skeletal modelling and parameterisation in vivo. PhD thesis, University of Warwick.

Zou, Cunlu (2010) Applications of Granger causality to biological data. PhD thesis, University of Warwick.